Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 OR56B2P-201ENST00000317102 954 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC079809.1-201ENST00000415468 276 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 FABP7P1-201ENST00000424004 391 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AL035407.1-201ENST00000429211 571 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 MTCO3P21-201ENST00000430791 643 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC093155.1-201ENST00000440164 826 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC023271.1-201ENST00000445936 1090 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC097262.1-201ENST00000452559 548 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 RPS27AP8-201ENST00000452665 445 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC073387.1-201ENST00000453261 709 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 RPL7AP52-201ENST00000458096 790 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 RPL23AP56-201ENST00000460778 453 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 MTND1P16-201ENST00000465177 898 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 RN7SL197P-201ENST00000466981 299 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 RN7SL542P-201ENST00000467147 294 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 FPGT-203ENST00000467578 601 ntTSL 2 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 RN7SL303P-201ENST00000469773 251 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 MTND4LP31-201ENST00000514859 294 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 SCARNA20.4-201ENST00000516969 131 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC092709.1-201ENST00000521355 1045 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC018442.3-201ENST00000523025 183 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 OR4K7P-201ENST00000580232 945 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 NTAN1P1-201ENST00000603150 646 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC135507.1-201ENST00000607214 561 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC072039.2-201ENST00000608883 439 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC131235.4-201ENST00000609288 620 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 HULC.1-201ENST00000612720 240 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC114781.5-201ENST00000615297 108 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 BX005214.3-202ENST00000619809 325 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 uc_338.7-201ENST00000621834 124 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 AC098679.4-201ENST00000624241 654 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 SLC10A5P1-201ENST00000379063 1306 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 ZNF542P-204ENST00000482727 1305 ntBASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMC1BQ8NDV3 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 RNU6-619P-201ENST00000365146 108 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 Y_RNA.436-201ENST00000384097 102 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 AL450992.3-201ENST00000413192 568 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 AC048351.1-201ENST00000420064 602 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 RPL7P44-201ENST00000424827 742 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 AC098826.1-201ENST00000433943 471 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 OR4C10P-201ENST00000434991 931 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 AL591503.2-201ENST00000442314 1005 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 ANKRD30BP3-201ENST00000444850 1070 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 AL034418.1-201ENST00000448675 860 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 HMGB1P4-201ENST00000455362 567 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 AC022133.1-201ENST00000490961 571 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 HNRNPKP5-201ENST00000515300 253 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 RNU2-30P-201ENST00000516209 141 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 RNU6-1225P-201ENST00000516336 65 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.87□□□□□ -1.47
SMC1BQ8NDV3 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms