Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC008494.2-201ENST00000514544 370 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 RN7SKP234-201ENST00000517173 224 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 AL352979.3-201ENST00000553515 247 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 RPL21P7-201ENST00000557463 483 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 AC027455.1-201ENST00000574104 594 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 AC005255.1-201ENST00000593748 216 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 AL161729.3-201ENST00000603533 673 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 KATNBL1P5-201ENST00000605015 517 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 STMN1P1-201ENST00000617809 440 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 AL445363.3-201ENST00000623080 671 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 AC112200.1-201ENST00000625015 234 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 ERCC6-202ENST00000374127 1782 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 EOGT-210ENST00000615922 1931 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 SNORD96B-201ENST00000386148 79 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 DNAJC19P6-201ENST00000401853 280 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 SNORA74C-2-201ENST00000411179 201 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 NUP35P2-201ENST00000416748 943 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AL356095.1-201ENST00000417217 199 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 MTCO1P54-201ENST00000430139 712 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 COX6B1P7-201ENST00000430845 235 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 MRPL50P1-201ENST00000431951 384 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 BTF3P10-201ENST00000433415 495 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AC073587.1-201ENST00000447093 876 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AL592156.1-201ENST00000508758 304 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AC008565.1-201ENST00000509046 885 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 HMGB3P13-201ENST00000511263 607 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 IGKV2-23-201ENST00000518729 323 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AC105233.3-201ENST00000531125 744 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 SNRPGP1-201ENST00000553864 222 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AL442163.2-201ENST00000553912 710 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AC053481.4-201ENST00000583164 216 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AC005034.4-201ENST00000603612 899 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 FAM27D1-201ENST00000612308 341 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AL118556.2-201ENST00000614375 824 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AC005086.4-201ENST00000623065 213 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AC024595.1-201ENST00000623088 387 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 AL163152.1-201ENST00000642001 374 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 MTCO1P14-201ENST00000441695 1559 ntBASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HDDC3Q8N4P3 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 OR11H5P-202ENST00000641612 1325 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 IL6STP1-201ENST00000346911 1020 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 MIR195-201ENST00000385194 87 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 RPS24P12-201ENST00000402084 394 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 RN7SKP182-201ENST00000410772 298 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 CYCSP10-201ENST00000417973 294 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 RPEP2-201ENST00000432149 701 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms