Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 SNORA70.8-201ENST00000384231 136 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 MIR138-2-201ENST00000384916 84 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 TRBV19-201ENST00000390393 552 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 FAUP2-201ENST00000394301 401 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AL049697.2-201ENST00000403708 294 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC074085.1-201ENST00000413598 418 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 RPL34P3-201ENST00000421454 338 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC018630.2-202ENST00000422992 927 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC005517.2-201ENST00000424673 553 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC013403.1-201ENST00000436954 263 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 PRPS1P1-201ENST00000445305 876 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AL118520.1-201ENST00000450770 291 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 TREML3P-201ENST00000457327 501 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC009411.2-201ENST00000458359 539 ntTSL 4 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 RPL35AP28-201ENST00000459730 331 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC022034.3-201ENST00000471393 478 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 RN7SL612P-201ENST00000497704 295 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC110792.2-201ENST00000510278 224 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC087752.2-201ENST00000521219 281 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 WBP1LP3-201ENST00000523033 208 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AL135978.1-201ENST00000553618 1266 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 C14orf2-209ENST00000554880 707 ntAPPRIS P1 TSL 3 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 FAM30C-201ENST00000561158 410 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 NQO1-205ENST00000561500 891 ntTSL 3 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AL359704.2-201ENST00000604335 521 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AL591686.2-201ENST00000608241 475 ntTSL 4 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC092807.2-201ENST00000609367 243 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 LRMDA-216ENST00000611306 393 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC012629.3-201ENST00000623397 328 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 BIN2P1-201ENST00000504996 1530 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AC007842.1-201ENST00000597336 2039 ntBASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.4
DEPDC4Q8N2C3 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 MTND5P1-201ENST00000445440 1375 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 AC009120.2-204ENST00000621548 2032 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 RPL24P4-201ENST00000326586 421 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 RNU6-82P-201ENST00000363970 107 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 Y_RNA.212-201ENST00000364177 102 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 RN7SKP188-201ENST00000410789 317 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 AKR1D1P1-201ENST00000457236 936 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 AC006967.1-201ENST00000467608 589 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 RN7SL456P-201ENST00000469290 295 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 TUBBP11-201ENST00000472255 252 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 MYL6P4-201ENST00000477911 453 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 AL049874.2-201ENST00000492636 288 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 TRBVA-201ENST00000498804 316 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 AC016559.2-201ENST00000510759 359 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 RPL39P5-202ENST00000512505 151 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 DCAF13P2-201ENST00000514188 555 ntBASIC6.32□□□□□ -1.4
DEPDC4Q8N2C3 Y_RNA.682-201ENST00000516457 100 ntBASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms