Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU6-560P-201ENST00000364007 108 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 RNU6-619P-201ENST00000365146 108 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 OR52E6-202ENST00000379946 954 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 SNORD116-1-201ENST00000384335 95 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 MIR217-201ENST00000384817 110 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 MIR92A2-201ENST00000385299 75 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
HOXA1P49639 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA1P49639 AL161909.1-201ENST00000397390 712 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.01□□□□□ -1.77
HOXA1P49639 AC009804.1-201ENST00000400949 179 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 SKINT1L-201ENST00000401057 817 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AL078604.1-201ENST00000404609 466 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 NUDT19P3-201ENST00000404698 555 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXA1P49639 RNU2-42P-201ENST00000410697 113 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA1P49639 AC234782.4-201ENST00000417646 1048 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC4.01□□□□□ -1.77
HOXA1P49639 AL139421.1-201ENST00000423010 169 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA1P49639 DPRXP1-201ENST00000426312 460 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA1P49639 USP9YP11-201ENST00000427537 717 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 RPS24P8-201ENST00000431490 402 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA1P49639 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA1P49639 EIF4A1P6-201ENST00000448133 1210 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA1P49639 AC144530.1-201ENST00000452862 555 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 FABP3P2-201ENST00000453169 399 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA1P49639 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA1P49639 AC010468.1-201ENST00000461022 817 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXA1P49639 RPL7P39-201ENST00000481157 744 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC126121.1-201ENST00000482313 553 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA1P49639 RPS4XP18-201ENST00000495480 763 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXA1P49639 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA1P49639 AC139783.2-201ENST00000504847 1145 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXA1P49639 HSPE1P23-201ENST00000509838 286 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC008494.2-201ENST00000514544 370 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 BX510359.5-201ENST00000515651 304 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 MTCO1P49-201ENST00000523429 802 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 MTCO1P47-201ENST00000523889 1271 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC4.01□□□□□ -1.77
HOXA1P49639 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA1P49639 AP000619.3-201ENST00000535634 1127 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC4.01□□□□□ -1.77
HOXA1P49639 AC126177.5-201ENST00000549599 178 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA1P49639 AC087465.1-201ENST00000560574 245 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC090888.1-201ENST00000561335 1141 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC009101.1-201ENST00000568135 242 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC090312.2-201ENST00000582687 378 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA1P49639 AC110760.3-201ENST00000598794 467 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA1P49639 AC015726.1-201ENST00000602353 681 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC110741.2-201ENST00000605278 268 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AP005432.2-201ENST00000608162 586 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AP004247.3-201ENST00000608682 624 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 VIS1.1-201ENST00000610517 203 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA1P49639 RPSAP73-201ENST00000614820 330 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC023158.2-201ENST00000614876 543 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA1P49639 MIR6837-201ENST00000620884 64 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC103858.2-201ENST00000621471 543 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC026124.2-201ENST00000621847 656 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AP006248.2-201ENST00000623309 592 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC4.01□□□□□ -1.77
HOXA1P49639 AC068620.4-201ENST00000636730 1182 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 AC007671.2-201ENST00000637344 619 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXA1P49639 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA1P49639 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA1P49639 SGO1P2-201ENST00000429458 1589 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
HOXA1P49639 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4□□□□□ -1.77
HOXA1P49639 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4□□□□□ -1.77
HOXA1P49639 AL359922.3-201ENST00000624779 1670 ntBASIC4□□□□□ -1.77
HOXA1P49639 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
HOXA1P49639 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXA1P49639 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
HOXA1P49639 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
HOXA1P49639 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXA1P49639 OR56B2P-201ENST00000317102 954 ntBASIC4□□□□□ -1.77
HOXA1P49639 SNORA66-201ENST00000384792 133 ntBASIC4□□□□□ -1.77
HOXA1P49639 MIR513A2-201ENST00000385249 127 ntBASIC4□□□□□ -1.77
HOXA1P49639 AL138878.1-201ENST00000405131 347 ntBASIC4□□□□□ -1.77
HOXA1P49639 ZNF603P-201ENST00000405613 487 ntBASIC4□□□□□ -1.77
HOXA1P49639 SNORA77-201ENST00000408716 125 ntBASIC4□□□□□ -1.77
HOXA1P49639 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4□□□□□ -1.77
HOXA1P49639 RNA5SP239-201ENST00000410218 129 ntBASIC4□□□□□ -1.77
HOXA1P49639 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4□□□□□ -1.77
HOXA1P49639 GJA6P-201ENST00000415117 1042 ntBASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms