Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HNF4AP41235 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.34□□□□□ -1.71
HNF4AP41235 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HNF4AP41235 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HNF4AP41235 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HNF4AP41235 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HNF4AP41235 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HNF4AP41235 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
HNF4AP41235 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
HNF4AP41235 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
HNF4AP41235 RNVU1-6-201ENST00000364688 164 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 RNA5SP22-201ENST00000365393 109 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
HNF4AP41235 SNORA11B-201ENST00000408175 129 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.34□□□□□ -1.71
HNF4AP41235 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.34□□□□□ -1.71
HNF4AP41235 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HNF4AP41235 SNRPFP1-201ENST00000414761 252 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 AC016769.2-201ENST00000414815 475 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HNF4AP41235 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.34□□□□□ -1.71
HNF4AP41235 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC4.34□□□□□ -1.71
HNF4AP41235 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HNF4AP41235 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.34□□□□□ -1.71
HNF4AP41235 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.34□□□□□ -1.71
HNF4AP41235 RPS26P56-201ENST00000444468 240 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 MOB1AP2-201ENST00000446060 614 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.34□□□□□ -1.71
HNF4AP41235 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.34□□□□□ -1.71
HNF4AP41235 CYCSP20-201ENST00000473154 315 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 GAPDHP36-201ENST00000480688 918 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 AC090013.1-201ENST00000485147 480 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.34□□□□□ -1.71
HNF4AP41235 AC112518.2-201ENST00000508565 425 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.34□□□□□ -1.71
HNF4AP41235 TMEM248P1-201ENST00000510579 951 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 IGHV3-32-201ENST00000519182 355 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.34□□□□□ -1.71
HNF4AP41235 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.34□□□□□ -1.71
HNF4AP41235 AC137768.1-201ENST00000549998 553 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 MTCYBP28-201ENST00000566728 1132 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 MTND6P33-201ENST00000571794 183 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 AC069061.3-201ENST00000582254 823 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.34□□□□□ -1.71
HNF4AP41235 BNIP3P4-201ENST00000604946 565 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 AC005156.1-201ENST00000613371 573 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 AL353726.1-201ENST00000614041 1000 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 RN7SL722P-201ENST00000617780 284 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 RN7SL565P-201ENST00000618246 284 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
HNF4AP41235 AC073342.3-201ENST00000624211 193 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 AL356121.2-201ENST00000624715 780 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 AC010608.3-201ENST00000625048 527 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC4.34□□□□□ -1.71
HNF4AP41235 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HNF4AP41235 AC012618.3-205ENST00000637896 1496 ntBASIC4.34□□□□□ -1.71
HNF4AP41235 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC4.34□□□□□ -1.71
HNF4AP41235 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.34□□□□□ -1.71
HNF4AP41235 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.34□□□□□ -1.71
HNF4AP41235 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
HNF4AP41235 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HNF4AP41235 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HNF4AP41235 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.34□□□□□ -1.72
HNF4AP41235 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.72
HNF4AP41235 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
HNF4AP41235 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.33□□□□□ -1.72
HNF4AP41235 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.33□□□□□ -1.72
HNF4AP41235 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HNF4AP41235 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HNF4AP41235 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.33□□□□□ -1.72
HNF4AP41235 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.33□□□□□ -1.72
HNF4AP41235 AC079741.1-201ENST00000321498 212 ntBASIC4.33□□□□□ -1.72
HNF4AP41235 RNA5SP307-201ENST00000362863 116 ntBASIC4.33□□□□□ -1.72
HNF4AP41235 SNORD113.2-201ENST00000364166 89 ntBASIC4.33□□□□□ -1.72
HNF4AP41235 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
HNF4AP41235 SNORA70F-201ENST00000384142 135 ntBASIC4.33□□□□□ -1.72
HNF4AP41235 RNU6-398P-201ENST00000384143 109 ntBASIC4.33□□□□□ -1.72
HNF4AP41235 RNU6-1151P-201ENST00000384684 107 ntBASIC4.33□□□□□ -1.72
HNF4AP41235 AL355379.1-201ENST00000405542 640 ntBASIC4.33□□□□□ -1.72
HNF4AP41235 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.33□□□□□ -1.72
HNF4AP41235 RPL37P18-201ENST00000411602 243 ntBASIC4.33□□□□□ -1.72
HNF4AP41235 CENPIP1-201ENST00000425713 902 ntBASIC4.33□□□□□ -1.72
HNF4AP41235 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.33□□□□□ -1.72
HNF4AP41235 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC4.33□□□□□ -1.72
HNF4AP41235 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.33□□□□□ -1.72
HNF4AP41235 AL590399.6-201ENST00000446396 307 ntBASIC4.33□□□□□ -1.72
HNF4AP41235 HMGN2P21-201ENST00000447764 270 ntBASIC4.33□□□□□ -1.72
HNF4AP41235 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HNF4AP41235 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HNF4AP41235 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.33□□□□□ -1.72
HNF4AP41235 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC4.33□□□□□ -1.72
HNF4AP41235 DDX39BP2-208ENST00000453923 258 ntBASIC4.33□□□□□ -1.72
HNF4AP41235 NDUFA12P1-201ENST00000455914 406 ntBASIC4.33□□□□□ -1.72
HNF4AP41235 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.33□□□□□ -1.72
HNF4AP41235 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
HNF4AP41235 RPS26P28-201ENST00000470806 348 ntBASIC4.33□□□□□ -1.72
HNF4AP41235 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.33□□□□□ -1.72
HNF4AP41235 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.33□□□□□ -1.72
HNF4AP41235 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms