Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 C1DP5-201ENST00000525775 383 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXC9P31274 OR4A12P-201ENST00000530847 918 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXC9P31274 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXC9P31274 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC5.13□□□□□ -1.59
HOXC9P31274 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXC9P31274 SRGNP1-201ENST00000603392 451 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 AC026741.1-201ENST00000605892 482 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC5.13□□□□□ -1.59
HOXC9P31274 MIR7154-201ENST00000620673 73 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 AL138955.1-201ENST00000622881 1040 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 AC010872.1-201ENST00000624225 675 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 U6.105-201ENST00000637379 88 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXC9P31274 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.13□□□□□ -1.59
HOXC9P31274 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXC9P31274 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.13□□□□□ -1.59
HOXC9P31274 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXC9P31274 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
HOXC9P31274 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HOXC9P31274 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HOXC9P31274 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
HOXC9P31274 RNU6-925P-201ENST00000384629 104 ntBASIC5.12□□□□□ -1.59
HOXC9P31274 AC002524.1-201ENST00000411687 547 ntBASIC5.12□□□□□ -1.59
HOXC9P31274 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.12□□□□□ -1.59
HOXC9P31274 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC5.12□□□□□ -1.59
HOXC9P31274 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC5.12□□□□□ -1.59
HOXC9P31274 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC5.12□□□□□ -1.59
HOXC9P31274 RPL23AP83-201ENST00000434984 473 ntBASIC5.12□□□□□ -1.59
HOXC9P31274 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.12□□□□□ -1.59
HOXC9P31274 PRDX3P3-201ENST00000447765 522 ntBASIC5.12□□□□□ -1.59
HOXC9P31274 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.12□□□□□ -1.59
HOXC9P31274 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXC9P31274 RPL7P24-201ENST00000493052 752 ntBASIC5.12□□□□□ -1.59
HOXC9P31274 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC5.12□□□□□ -1.59
HOXC9P31274 AC025554.1-201ENST00000505641 188 ntBASIC5.12□□□□□ -1.59
HOXC9P31274 AC112518.2-201ENST00000508565 425 ntBASIC5.12□□□□□ -1.59
HOXC9P31274 RNU6-1308P-201ENST00000516817 103 ntBASIC5.12□□□□□ -1.59
HOXC9P31274 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXC9P31274 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HOXC9P31274 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC5.12□□□□□ -1.59
HOXC9P31274 CYP4A43P-201ENST00000568156 121 ntBASIC5.12□□□□□ -1.59
HOXC9P31274 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXC9P31274 AC006116.7-201ENST00000590141 756 ntBASIC5.12□□□□□ -1.59
HOXC9P31274 AP003117.1-201ENST00000602771 554 ntBASIC5.12□□□□□ -1.59
HOXC9P31274 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC5.12□□□□□ -1.59
HOXC9P31274 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
HOXC9P31274 LINC00561-201ENST00000565815 2738 ntBASIC5.12□□□□□ -1.59
HOXC9P31274 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXC9P31274 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXC9P31274 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXC9P31274 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXC9P31274 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
HOXC9P31274 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC5.11□□□□□ -1.59
HOXC9P31274 AC107021.2-201ENST00000567714 2095 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXC9P31274 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.11□□□□□ -1.59
HOXC9P31274 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
HOXC9P31274 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXC9P31274 SNORA9-201ENST00000384215 133 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 LSM5-206ENST00000409987 504 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXC9P31274 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXC9P31274 RPS29P4-201ENST00000414733 161 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC5.11□□□□□ -1.59
HOXC9P31274 HSPD1P21-201ENST00000436541 245 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 RPS17P13-201ENST00000448974 407 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 RPL7P55-201ENST00000450522 746 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 FCF1P6-201ENST00000456841 595 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 RPL32P14-201ENST00000463196 378 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 AC107015.1-201ENST00000466902 747 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXC9P31274 AC006499.6-201ENST00000511169 607 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.11□□□□□ -1.59
HOXC9P31274 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXC9P31274 MTHFD2P4-201ENST00000515074 1025 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 IGHV3-63-201ENST00000518422 341 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.11□□□□□ -1.59
HOXC9P31274 HIGD1AP18-201ENST00000520730 278 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
HOXC9P31274 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.11□□□□□ -1.59
HOXC9P31274 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXC9P31274 C1GALT1P1-201ENST00000548895 1089 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 AC017100.2-201ENST00000584628 355 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 AL391834.2-201ENST00000609982 546 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXC9P31274 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXC9P31274 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXC9P31274 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXC9P31274 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXC9P31274 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HOXC9P31274 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
HOXC9P31274 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
HOXC9P31274 AC015813.6-201ENST00000624409 5808 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 ZNF90P1-201ENST00000480493 1951 ntBASIC5.11□□□□□ -1.59
HOXC9P31274 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXC9P31274 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.1□□□□□ -1.59
HOXC9P31274 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXC9P31274 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
HOXC9P31274 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms