Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC009127.1-201ENST00000467090 155 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXD3P31249 AC083982.1-201ENST00000485679 344 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AC006499.5-201ENST00000505037 514 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.75
HOXD3P31249 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
HOXD3P31249 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXD3P31249 EIF3KP3-201ENST00000514461 639 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 HMGN1P9-201ENST00000515212 298 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 MTCO1P30-201ENST00000515244 580 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD3P31249 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD3P31249 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC4.09□□□□□ -1.75
HOXD3P31249 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD3P31249 OR5D15P-201ENST00000531671 942 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD3P31249 AC137768.1-201ENST00000549998 553 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD3P31249 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.09□□□□□ -1.75
HOXD3P31249 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD3P31249 AC093519.1-201ENST00000566109 298 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD3P31249 KPNA2P3-201ENST00000584190 848 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXD3P31249 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD3P31249 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXD3P31249 AL354760.1-201ENST00000608357 643 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AC100793.4-201ENST00000613683 429 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 MIR6133-201ENST00000617057 108 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AC092650.2-201ENST00000619984 902 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXD3P31249 AP003400.3-201ENST00000624904 346 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AL353662.3-201ENST00000625131 237 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 CDRT1-208ENST00000630868 794 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
HOXD3P31249 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
HOXD3P31249 OR5BR1P-201ENST00000524992 1330 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AC010329.2-201ENST00000595195 2737 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXD3P31249 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
HOXD3P31249 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
HOXD3P31249 PABPC1P9-201ENST00000426076 1612 ntBASIC4.09□□□□□ -1.76
HOXD3P31249 AC027514.1-201ENST00000588561 1603 ntBASIC4.09□□□□□ -1.76
HOXD3P31249 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXD3P31249 AC006206.1-201ENST00000544842 3387 ntBASIC4.09□□□□□ -1.76
HOXD3P31249 AL603750.1-201ENST00000624216 1717 ntBASIC4.09□□□□□ -1.76
HOXD3P31249 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.09□□□□□ -1.76
HOXD3P31249 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
HOXD3P31249 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXD3P31249 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD3P31249 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXD3P31249 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
HOXD3P31249 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD3P31249 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HOXD3P31249 SCARNA15-201ENST00000607520 4325 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC015813.6-201ENST00000624409 5808 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXD3P31249 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD3P31249 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXD3P31249 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXD3P31249 RNY3P10-201ENST00000384764 102 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 TMSB4XP8-201ENST00000402089 135 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AL078595.1-201ENST00000404458 226 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 UBE2V1P10-201ENST00000414685 269 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 TMSB4XP6-201ENST00000415187 135 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.08□□□□□ -1.76
HOXD3P31249 TMSB4XP1-201ENST00000424567 135 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 RPS26P47-201ENST00000427219 348 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD3P31249 OFD1P13Y-201ENST00000431179 1232 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD3P31249 RPL23AP15-201ENST00000450202 459 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 RPL5P32-201ENST00000454085 879 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 CFTRP1-201ENST00000456646 183 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXD3P31249 RPS15AP1-201ENST00000457423 391 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD3P31249 AC079168.1-201ENST00000458741 345 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD3P31249 RN7SL860P-201ENST00000473738 223 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXD3P31249 RPL7P6-201ENST00000480903 738 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD3P31249 AC058823.1-201ENST00000485315 474 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC022133.1-201ENST00000490961 571 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD3P31249 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXD3P31249 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXD3P31249 AC108078.3-201ENST00000502633 489 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 SNX5P1-201ENST00000505757 1041 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC025674.1-201ENST00000507074 324 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD3P31249 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD3P31249 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD3P31249 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.08□□□□□ -1.76
HOXD3P31249 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD3P31249 RN7SKP147-201ENST00000517154 244 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC008802.1-201ENST00000519121 791 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD3P31249 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms