Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RPS20P1-201ENST00000434853 354 ntBASIC4.37□□□□□ -1.71
COL5A3P25940 AC025750.2-201ENST00000442609 450 ntBASIC4.37□□□□□ -1.71
COL5A3P25940 TMED11P-201ENST00000479478 690 ntBASIC4.37□□□□□ -1.71
COL5A3P25940 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.37□□□□□ -1.71
COL5A3P25940 AC112198.1-201ENST00000505369 1220 ntBASIC4.37□□□□□ -1.71
COL5A3P25940 IGHV3-63-201ENST00000518422 341 ntBASIC4.37□□□□□ -1.71
COL5A3P25940 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.37□□□□□ -1.71
COL5A3P25940 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.37□□□□□ -1.71
COL5A3P25940 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL5A3P25940 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.37□□□□□ -1.71
COL5A3P25940 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL5A3P25940 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL5A3P25940 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL5A3P25940 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.36□□□□□ -1.71
COL5A3P25940 AL831737.1-201ENST00000441288 271 ntBASIC4.36□□□□□ -1.71
COL5A3P25940 SEPT14P1-201ENST00000458703 648 ntBASIC4.36□□□□□ -1.71
COL5A3P25940 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.36□□□□□ -1.71
COL5A3P25940 AC096576.1-201ENST00000489014 359 ntBASIC4.36□□□□□ -1.71
COL5A3P25940 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC4.36□□□□□ -1.71
COL5A3P25940 AC008489.1-201ENST00000524271 483 ntBASIC4.36□□□□□ -1.71
COL5A3P25940 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL5A3P25940 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.36□□□□□ -1.71
COL5A3P25940 AC105227.2-201ENST00000615075 605 ntBASIC4.36□□□□□ -1.71
COL5A3P25940 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL5A3P25940 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL5A3P25940 AC068254.2-201ENST00000623938 3577 ntBASIC4.36□□□□□ -1.71
COL5A3P25940 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL5A3P25940 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.36□□□□□ -1.71
COL5A3P25940 AC119744.1-201ENST00000454746 1715 ntBASIC4.36□□□□□ -1.71
COL5A3P25940 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.36□□□□□ -1.71
COL5A3P25940 AL078595.2-201ENST00000605309 1780 ntBASIC4.36□□□□□ -1.71
COL5A3P25940 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL5A3P25940 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.36□□□□□ -1.71
COL5A3P25940 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A3P25940 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A3P25940 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC4.35□□□□□ -1.71
COL5A3P25940 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.35□□□□□ -1.71
COL5A3P25940 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC4.35□□□□□ -1.71
COL5A3P25940 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.35□□□□□ -1.71
COL5A3P25940 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.35□□□□□ -1.71
COL5A3P25940 AC006386.2-201ENST00000624491 75 ntBASIC4.35□□□□□ -1.71
COL5A3P25940 AC012005.1-201ENST00000624575 75 ntBASIC4.35□□□□□ -1.71
COL5A3P25940 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A3P25940 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A3P25940 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A3P25940 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A3P25940 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.35□□□□□ -1.71
COL5A3P25940 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
COL5A3P25940 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A3P25940 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A3P25940 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A3P25940 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A3P25940 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A3P25940 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A3P25940 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.35□□□□□ -1.71
COL5A3P25940 BX842559.1-201ENST00000419615 532 ntBASIC4.35□□□□□ -1.71
COL5A3P25940 S100A11P2-201ENST00000467589 312 ntBASIC4.35□□□□□ -1.71
COL5A3P25940 RN7SL594P-201ENST00000470590 287 ntBASIC4.35□□□□□ -1.71
COL5A3P25940 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.35□□□□□ -1.71
COL5A3P25940 SULT1C2P2-201ENST00000562517 294 ntBASIC4.35□□□□□ -1.71
COL5A3P25940 MIR4513-201ENST00000581077 86 ntBASIC4.35□□□□□ -1.71
COL5A3P25940 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC4.35□□□□□ -1.71
COL5A3P25940 SNORD39.4-201ENST00000620099 78 ntBASIC4.35□□□□□ -1.71
COL5A3P25940 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
COL5A3P25940 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A3P25940 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.35□□□□□ -1.71
COL5A3P25940 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
COL5A3P25940 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.34□□□□□ -1.71
COL5A3P25940 TNPO1P3-201ENST00000436471 2662 ntBASIC4.34□□□□□ -1.71
COL5A3P25940 RNU1-70P-201ENST00000362618 164 ntBASIC4.34□□□□□ -1.71
COL5A3P25940 RNU1-140P-201ENST00000365040 165 ntBASIC4.34□□□□□ -1.71
COL5A3P25940 RN7SKP199-201ENST00000410325 305 ntBASIC4.34□□□□□ -1.71
COL5A3P25940 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL5A3P25940 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC4.34□□□□□ -1.71
COL5A3P25940 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.34□□□□□ -1.71
COL5A3P25940 MTND6P32-201ENST00000457611 483 ntBASIC4.34□□□□□ -1.71
COL5A3P25940 AP001992.1-205ENST00000462248 379 ntBASIC4.34□□□□□ -1.71
COL5A3P25940 NPM1P17-201ENST00000479221 602 ntBASIC4.34□□□□□ -1.71
COL5A3P25940 AC139783.2-201ENST00000504847 1145 ntBASIC4.34□□□□□ -1.71
COL5A3P25940 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.34□□□□□ -1.71
COL5A3P25940 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC4.34□□□□□ -1.71
COL5A3P25940 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
COL5A3P25940 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.34□□□□□ -1.71
COL5A3P25940 AC019072.1-201ENST00000604535 1551 ntBASIC4.34□□□□□ -1.71
COL5A3P25940 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
COL5A3P25940 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL5A3P25940 Z83843.1-201ENST00000604070 3685 ntBASIC4.34□□□□□ -1.72
COL5A3P25940 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL5A3P25940 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
COL5A3P25940 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
COL5A3P25940 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
COL5A3P25940 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A3P25940 AC092435.4-201ENST00000623012 4159 ntBASIC4.33□□□□□ -1.72
COL5A3P25940 RPL5P30-201ENST00000465511 891 ntBASIC4.33□□□□□ -1.72
COL5A3P25940 AC020893.1-201ENST00000502452 580 ntBASIC4.33□□□□□ -1.72
COL5A3P25940 AC023141.12-201ENST00000512399 199 ntBASIC4.33□□□□□ -1.72
COL5A3P25940 AC018442.3-201ENST00000523025 183 ntBASIC4.33□□□□□ -1.72
COL5A3P25940 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.33□□□□□ -1.72
COL5A3P25940 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.33□□□□□ -1.72
COL5A3P25940 AC092868.3-201ENST00000560515 784 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms