Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AC027455.1-201ENST00000574104 594 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 MIR4789-201ENST00000577469 82 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AL606834.3-201ENST00000602615 496 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AC233280.2-201ENST00000603917 1070 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AC093673.2-201ENST00000609674 331 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 LINC00901.1-201ENST00000617252 152 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 MIR6891-201ENST00000618788 93 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AC090506.2-201ENST00000624521 419 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AC009229.4-201ENST00000623854 1947 ntBASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC3Q9BQI4 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC073055.1-201ENST00000456901 1621 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 RNU5B-1-201ENST00000363286 116 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 U6.112-201ENST00000384129 70 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 NRBF2P2-201ENST00000413087 861 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 RPL6P29-201ENST00000414863 865 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC062016.2-201ENST00000420950 676 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 PPIAP13-201ENST00000434706 478 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AL031663.1-201ENST00000437445 219 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 TVP23BP2-201ENST00000455082 615 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 snoU109.3-201ENST00000459477 145 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC018635.1-201ENST00000468292 1030 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 CCDC75P1-201ENST00000469247 791 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 RPL23AP65-201ENST00000475608 468 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 RPL35P6-201ENST00000490024 372 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 TRAV31-201ENST00000502780 342 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 HMGB1P23-201ENST00000518743 568 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC124293.1-201ENST00000530034 493 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 TVP23BP1-201ENST00000557500 617 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC093227.2-201ENST00000589357 285 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC091057.3-201ENST00000602684 733 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 PSMA6P4-201ENST00000603247 718 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC116447.1-201ENST00000613153 453 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 U6.48-201ENST00000618523 106 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC022079.2-201ENST00000619739 566 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AP003485.1-201ENST00000625093 753 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 RNA5SP196-201ENST00000625967 102 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 OR4G3P-201ENST00000633500 913 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC099654.9-201ENST00000637055 678 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 LARP1BP1-201ENST00000506036 1359 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 AC126323.6-202ENST00000568092 3511 ntBASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC3Q9BQI4 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 SPRR2C-201ENST00000290702 219 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 RNU6-1339P-201ENST00000363574 91 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AC019155.1-201ENST00000382242 574 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 MIR134-201ENST00000385258 73 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 RNU6-298P-201ENST00000390888 96 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 RNU6-628P-201ENST00000410675 107 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 RNU6-603P-201ENST00000411403 107 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 ELOCP6-201ENST00000429066 328 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AL353597.2-202ENST00000434901 373 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AC009263.1-201ENST00000441193 1239 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 HSFY6P-201ENST00000445573 403 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 MTND2P8-201ENST00000450555 1025 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms