Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 MIR4732-201ENST00000581873 76 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC243960.4-201ENST00000600532 288 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AL512782.1-201ENST00000603093 364 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC105429.2-201ENST00000610567 517 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC068726.1-201ENST00000610993 341 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 MIR6885-201ENST00000612241 66 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AC093913.1-201ENST00000614178 329 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 TCL6_3.1-201ENST00000619064 137 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 AP001784.1-201ENST00000624107 428 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 MIR4496-201ENST00000635896 61 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 SAMMSON-227ENST00000642114 1199 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 GTF2IP4-201ENST00000453092 2054 ntBASIC4.98□□□□□ -1.61
CCDC140Q96MF4 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC140Q96MF4 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AC002525.1-201ENST00000624392 1622 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 OR4G1P-203ENST00000641984 1631 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AOX3P-204ENST00000491025 2107 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 XGY1-201ENST00000381172 446 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 RNU6-641P-201ENST00000384006 107 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 SNORD51-201ENST00000384320 80 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 RNU6-606P-201ENST00000384721 111 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 RPL32P23-201ENST00000397237 405 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AL136116.1-201ENST00000403591 381 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 RPL36P18-201ENST00000419316 318 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 OR1AA1P-201ENST00000419597 916 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AL139184.1-202ENST00000422303 222 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 MTATP6P16-201ENST00000434543 526 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 RPEP4-201ENST00000437636 602 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 OR7E116P-201ENST00000448529 957 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 HIGD1AP16-201ENST00000450986 258 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AC016724.1-201ENST00000453215 421 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 RNU7-59P-201ENST00000459101 61 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AC073594.1-201ENST00000462065 364 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 RPL5P22-201ENST00000480199 884 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 UBA52P7-201ENST00000486088 380 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 HIGD1AP3-201ENST00000515857 278 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AC078899.1-201ENST00000521432 1185 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AP005639.1-201ENST00000526939 192 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AC037471.2-201ENST00000564941 598 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 LAPTM4BP2-201ENST00000604542 446 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AC073046.2-201ENST00000604756 527 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AL589743.6-201ENST00000611025 117 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AC135507.2-201ENST00000612443 309 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AC244100.1-202ENST00000621554 382 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AP000843.1-201ENST00000624880 701 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 IQCB2P-201ENST00000401788 1633 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AC110373.1-201ENST00000505994 3505 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AL157700.1-201ENST00000561973 1432 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 ASNSP3-201ENST00000451989 1306 ntBASIC4.97□□□□□ -1.61
CCDC140Q96MF4 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC140Q96MF4 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms