Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MIR6716-201ENST00000613413 80 ntBASIC3.94□□□□□ -1.78
CCDC42Q96M95 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC42Q96M95 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC42Q96M95 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC42Q96M95 AC024560.2-201ENST00000507981 1497 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC42Q96M95 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC42Q96M95 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC42Q96M95 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC42Q96M95 SNORA62-201ENST00000365493 153 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 SNORA70C-201ENST00000384538 135 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 MIR184-201ENST00000384962 84 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 PTP4A1P5-201ENST00000420305 455 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 OSTCP5-201ENST00000425293 453 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 RPL23AP4-201ENST00000427757 463 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 AL158071.1-201ENST00000430315 461 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 AL645931.1-201ENST00000439737 410 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 AL162151.2-201ENST00000448875 158 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 HMGN2P7-201ENST00000456186 273 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC42Q96M95 AC087385.1-201ENST00000475062 312 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 ACTG1P13-201ENST00000486987 1043 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 RN7SL323P-201ENST00000494712 295 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 RNA5SP309-201ENST00000516670 106 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 SCARNA14-201ENST00000516903 136 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 CDH12P4-201ENST00000517835 295 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 CDH12P3-201ENST00000517935 295 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 CDH12P1-201ENST00000518435 295 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 NPM1P35-201ENST00000533043 868 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 AC068714.1-201ENST00000559623 800 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 AL606490.9-201ENST00000603331 271 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 MIR6820-201ENST00000611508 62 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 AC023043.4-201ENST00000612081 449 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 AL732618.1-201ENST00000623251 301 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 AP003072.5-201ENST00000623872 773 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 AC009452.1-201ENST00000640823 606 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 AP000553.6-201ENST00000641242 118 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
CCDC42Q96M95 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC42Q96M95 OTUD4P1-201ENST00000237841 3067 ntBASIC3.93□□□□□ -1.78
CCDC42Q96M95 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC42Q96M95 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC42Q96M95 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC42Q96M95 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CCDC42Q96M95 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC42Q96M95 AL136964.1-201ENST00000622038 2990 ntBASIC3.92□□□□□ -1.78
CCDC42Q96M95 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC42Q96M95 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC42Q96M95 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC42Q96M95 AC093084.1-201ENST00000424233 687 ntBASIC3.92□□□□□ -1.78
CCDC42Q96M95 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC42Q96M95 AC010655.1-201ENST00000449336 292 ntBASIC3.92□□□□□ -1.78
CCDC42Q96M95 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC42Q96M95 UBDP1-202ENST00000457888 382 ntBASIC3.92□□□□□ -1.78
CCDC42Q96M95 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC42Q96M95 AC004801.2-202ENST00000463559 283 ntBASIC3.92□□□□□ -1.78
CCDC42Q96M95 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC42Q96M95 PCBP2P3-201ENST00000509726 843 ntBASIC3.92□□□□□ -1.78
CCDC42Q96M95 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC42Q96M95 RN7SKP60-201ENST00000516985 239 ntBASIC3.92□□□□□ -1.78
CCDC42Q96M95 RAB9BP1-201ENST00000519581 626 ntBASIC3.92□□□□□ -1.78
CCDC42Q96M95 AL139174.1-201ENST00000531489 886 ntBASIC3.92□□□□□ -1.78
CCDC42Q96M95 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC42Q96M95 AC023161.2-201ENST00000551218 780 ntBASIC3.92□□□□□ -1.78
CCDC42Q96M95 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC42Q96M95 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC42Q96M95 MIR5047-201ENST00000579212 100 ntBASIC3.92□□□□□ -1.78
CCDC42Q96M95 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.92□□□□□ -1.78
CCDC42Q96M95 BMS1P7-201ENST00000602440 1052 ntBASIC3.92□□□□□ -1.78
CCDC42Q96M95 AC103710.3-201ENST00000608157 948 ntBASIC3.92□□□□□ -1.78
CCDC42Q96M95 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC42Q96M95 AC105105.5-201ENST00000622635 1294 ntBASIC3.92□□□□□ -1.78
CCDC42Q96M95 AC007656.2-201ENST00000624902 4547 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms