Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS39Q96JC1 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS39Q96JC1 AC245028.1-201ENST00000423259 256 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 OR4F13P-201ENST00000428478 931 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 PSMA2P3-201ENST00000429685 675 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 BX119904.1-201ENST00000432026 348 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 RPL23AP46-201ENST00000438548 490 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 AL138799.3-201ENST00000438968 350 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 RPL23AP33-201ENST00000442301 452 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 AC104306.1-201ENST00000449702 371 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 BX276092.4-201ENST00000452056 248 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 NDUFA12P1-201ENST00000455914 406 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 snoU13.7-201ENST00000459220 104 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 AC126121.1-201ENST00000482313 553 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 AC093720.1-201ENST00000505681 714 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 RN7SKP96-201ENST00000516948 297 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 AC010306.1-201ENST00000523223 1117 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 CIR1P1-201ENST00000524055 1133 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS39Q96JC1 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VPS39Q96JC1 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 AC068254.2-201ENST00000623938 3577 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS39Q96JC1 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS39Q96JC1 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS39Q96JC1 LINC02471-203ENST00000641941 4752 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS39Q96JC1 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS39Q96JC1 RNU1-14P-201ENST00000362759 152 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 RNA5SP36-201ENST00000410197 133 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 RN7SKP235-201ENST00000410662 305 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 USP9YP19-201ENST00000412165 485 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 NRBF2P2-201ENST00000413087 861 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 AC004552.1-201ENST00000419089 348 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 AC241520.1-201ENST00000422654 1099 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 AC115285.1-201ENST00000424879 736 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 CNOT7P1-201ENST00000429006 852 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS39Q96JC1 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 RPS15AP29-201ENST00000445539 400 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 MTND5P8-201ENST00000449817 1083 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 CABYRP1-201ENST00000465493 1045 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 RPS26P3-201ENST00000470205 348 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 AC090543.2-201ENST00000483963 348 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 AC004057.1-201ENST00000485827 348 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 SOD1P3-201ENST00000518682 454 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 HMGB1P23-201ENST00000518743 568 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 AC087272.1-201ENST00000523624 533 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS39Q96JC1 C1DP5-201ENST00000525775 383 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 AC139103.1-201ENST00000534696 1030 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 TRAV8-5-201ENST00000537369 341 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 CR383656.6-201ENST00000550518 394 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 AC090312.2-201ENST00000582687 378 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 OR1AB1P-201ENST00000585564 761 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 MIR6820-201ENST00000611508 62 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 FAM27D1-201ENST00000612308 341 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 AP000346.3-201ENST00000622821 210 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 AP005264.7-201ENST00000625003 745 ntBASIC4.18□□□□□ -1.74
VPS39Q96JC1 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS39Q96JC1 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS39Q96JC1 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS39Q96JC1 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS39Q96JC1 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS39Q96JC1 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS39Q96JC1 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms