Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RPL12P46-201ENST00000436610 195 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 OR52Y1P-201ENST00000452418 828 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AC098824.1-201ENST00000453565 980 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 MIR4672-201ENST00000583126 81 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AC244517.3-201ENST00000616254 1235 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AC079298.2-201ENST00000623885 459 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AL353743.1-202ENST00000431724 1695 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AL078595.2-201ENST00000605309 1780 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 SNORD17-201ENST00000390930 237 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 RPL6P21-201ENST00000418672 846 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 RSL24D1P3-201ENST00000449255 495 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AC006445.1-201ENST00000491925 405 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AGGF1P3-201ENST00000493675 1213 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 RPL5P23-201ENST00000496040 868 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 SUMO2P20-201ENST00000520803 283 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AL390816.3-201ENST00000604527 1066 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AC128687.2-201ENST00000609657 566 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 U4.6-201ENST00000621618 127 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AC119674.1-212ENST00000641155 993 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 BTBD10P1-201ENST00000549824 1352 ntBASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 MIR93-201ENST00000385024 80 ntBASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 MTND4LP20-201ENST00000402379 270 ntBASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 AL121834.1-202ENST00000404494 277 ntBASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 HMGB3P20-201ENST00000417997 600 ntBASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 RPS26P24-201ENST00000497656 331 ntBASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 AC010653.1-201ENST00000571108 881 ntBASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 MIR4513-201ENST00000581077 86 ntBASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 AL355596.1-201ENST00000565399 3996 ntBASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
CCDC88AQ3V6T2 OR6C64P-201ENST00000419708 825 ntBASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 MTND6P32-201ENST00000457611 483 ntBASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 RPL23AP71-201ENST00000470966 469 ntBASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 RPL32P34-201ENST00000486380 400 ntBASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 PHBP14-201ENST00000512887 367 ntBASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 AC241377.1-201ENST00000619797 406 ntBASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 ANKRD36P1-201ENST00000344424 659 ntBASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 YWHAQP9-201ENST00000445891 512 ntBASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 AC091905.1-201ENST00000624400 311 ntBASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 AC012078.1-201ENST00000405035 1646 ntBASIC4.47□□□□□ -1.69
CCDC88AQ3V6T2 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.46□□□□□ -1.69
CCDC88AQ3V6T2 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.46□□□□□ -1.69
CCDC88AQ3V6T2 UBA52P6-201ENST00000399822 382 ntBASIC4.46□□□□□ -1.7
CCDC88AQ3V6T2 RNF19BPX-201ENST00000426224 625 ntBASIC4.46□□□□□ -1.7
CCDC88AQ3V6T2 RPL21P110-201ENST00000433345 446 ntBASIC4.46□□□□□ -1.7
CCDC88AQ3V6T2 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC88AQ3V6T2 NANOGNBP1-201ENST00000448444 480 ntBASIC4.46□□□□□ -1.7
CCDC88AQ3V6T2 RPL21P8-201ENST00000465083 535 ntBASIC4.46□□□□□ -1.7
CCDC88AQ3V6T2 AC023161.2-201ENST00000551218 780 ntBASIC4.46□□□□□ -1.7
CCDC88AQ3V6T2 CR392039.4-201ENST00000624968 501 ntBASIC4.46□□□□□ -1.7
CCDC88AQ3V6T2 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC88AQ3V6T2 AC063923.1-201ENST00000478982 1619 ntBASIC4.46□□□□□ -1.7
CCDC88AQ3V6T2 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC88AQ3V6T2 AL133383.2-201ENST00000622958 2336 ntBASIC4.46□□□□□ -1.7
CCDC88AQ3V6T2 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.46□□□□□ -1.7
CCDC88AQ3V6T2 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms