Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SOX3P41225 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
SOX3P41225 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SOX3P41225 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SOX3P41225 AC011266.1-201ENST00000624119 3569 ntBASIC4.04□□□□□ -1.76
SOX3P41225 AC009313.2-201ENST00000417893 1941 ntBASIC4.04□□□□□ -1.76
SOX3P41225 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.04□□□□□ -1.76
SOX3P41225 MTATP6P31-201ENST00000406985 692 ntBASIC4.04□□□□□ -1.76
SOX3P41225 UBTFL3-201ENST00000418934 1024 ntBASIC4.04□□□□□ -1.76
SOX3P41225 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.04□□□□□ -1.76
SOX3P41225 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC4.04□□□□□ -1.76
SOX3P41225 MTCYBP32-201ENST00000427945 1084 ntBASIC4.04□□□□□ -1.76
SOX3P41225 PRELID3BP10-201ENST00000431957 584 ntBASIC4.04□□□□□ -1.76
SOX3P41225 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC4.04□□□□□ -1.76
SOX3P41225 AC091390.1-201ENST00000433904 331 ntBASIC4.04□□□□□ -1.76
SOX3P41225 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.04□□□□□ -1.76
SOX3P41225 AC114495.1-201ENST00000441274 436 ntBASIC4.04□□□□□ -1.76
SOX3P41225 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC4.04□□□□□ -1.76
SOX3P41225 AC243772.1-201ENST00000451620 410 ntBASIC4.04□□□□□ -1.76
SOX3P41225 VN1R32P-201ENST00000452234 905 ntBASIC4.04□□□□□ -1.76
SOX3P41225 DUXAP8-207ENST00000456786 622 ntBASIC4.04□□□□□ -1.76
SOX3P41225 RNU6-1218P-201ENST00000458990 108 ntBASIC4.04□□□□□ -1.76
SOX3P41225 UBTFL6-201ENST00000477929 1024 ntBASIC4.04□□□□□ -1.76
SOX3P41225 METTL15P1-201ENST00000481421 1045 ntBASIC4.04□□□□□ -1.76
SOX3P41225 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC4.04□□□□□ -1.76
SOX3P41225 ATP1B1P1-201ENST00000509767 915 ntBASIC4.04□□□□□ -1.76
SOX3P41225 AC104108.1-201ENST00000509930 412 ntBASIC4.04□□□□□ -1.76
SOX3P41225 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.04□□□□□ -1.76
SOX3P41225 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC4.04□□□□□ -1.76
SOX3P41225 PRELID3BP4-201ENST00000515476 571 ntBASIC4.04□□□□□ -1.76
SOX3P41225 RN7SKP122-201ENST00000515923 296 ntBASIC4.04□□□□□ -1.76
SOX3P41225 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.04□□□□□ -1.76
SOX3P41225 OR7E13P-201ENST00000526052 910 ntBASIC4.04□□□□□ -1.76
SOX3P41225 OR8I1P-201ENST00000529291 931 ntBASIC4.04□□□□□ -1.76
SOX3P41225 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.04□□□□□ -1.76
SOX3P41225 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.04□□□□□ -1.76
SOX3P41225 AC090515.3-201ENST00000560431 315 ntBASIC4.04□□□□□ -1.76
SOX3P41225 AL049838.1-201ENST00000563647 981 ntBASIC4.04□□□□□ -1.76
SOX3P41225 MTND1P8-201ENST00000571424 950 ntBASIC4.04□□□□□ -1.76
SOX3P41225 AC073387.2-201ENST00000604797 784 ntBASIC4.04□□□□□ -1.76
SOX3P41225 AL160290.3-201ENST00000604869 165 ntBASIC4.04□□□□□ -1.76
SOX3P41225 ARF4P1-201ENST00000605447 541 ntBASIC4.04□□□□□ -1.76
SOX3P41225 AC013468.1-201ENST00000608680 598 ntBASIC4.04□□□□□ -1.76
SOX3P41225 DUXAP10-204ENST00000612052 616 ntBASIC4.04□□□□□ -1.76
SOX3P41225 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
SOX3P41225 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.04□□□□□ -1.76
SOX3P41225 AC139713.2-210ENST00000641741 992 ntBASIC4.04□□□□□ -1.76
SOX3P41225 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SOX3P41225 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC4.04□□□□□ -1.76
SOX3P41225 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
SOX3P41225 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SOX3P41225 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SOX3P41225 EIF2AP4-201ENST00000424793 1781 ntBASIC4.04□□□□□ -1.76
SOX3P41225 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.04□□□□□ -1.76
SOX3P41225 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
SOX3P41225 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
SOX3P41225 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
SOX3P41225 AC105074.1-201ENST00000623380 3095 ntBASIC4.03□□□□□ -1.76
SOX3P41225 NSRP1P1-201ENST00000444067 1693 ntBASIC4.03□□□□□ -1.76
SOX3P41225 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.03□□□□□ -1.76
SOX3P41225 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.03□□□□□ -1.76
SOX3P41225 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
SOX3P41225 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.03□□□□□ -1.76
SOX3P41225 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SOX3P41225 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SOX3P41225 RNU6-304P-201ENST00000364855 107 ntBASIC4.03□□□□□ -1.76
SOX3P41225 OR6C69P-201ENST00000394268 893 ntBASIC4.03□□□□□ -1.76
SOX3P41225 RPL7P27-201ENST00000403775 720 ntBASIC4.03□□□□□ -1.76
SOX3P41225 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SOX3P41225 ZNF602P-201ENST00000405929 924 ntBASIC4.03□□□□□ -1.76
SOX3P41225 SNORA11F-201ENST00000408237 128 ntBASIC4.03□□□□□ -1.76
SOX3P41225 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.03□□□□□ -1.76
SOX3P41225 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.03□□□□□ -1.76
SOX3P41225 TRGV6-201ENST00000417928 299 ntBASIC4.03□□□□□ -1.76
SOX3P41225 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.03□□□□□ -1.76
SOX3P41225 AC234779.1-201ENST00000425910 285 ntBASIC4.03□□□□□ -1.76
SOX3P41225 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.03□□□□□ -1.76
SOX3P41225 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SOX3P41225 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.03□□□□□ -1.76
SOX3P41225 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.03□□□□□ -1.76
SOX3P41225 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.03□□□□□ -1.76
SOX3P41225 RPL23AP52-201ENST00000439311 478 ntBASIC4.03□□□□□ -1.76
SOX3P41225 ACTR3P2-201ENST00000439585 1257 ntBASIC4.03□□□□□ -1.76
SOX3P41225 AL358794.1-201ENST00000445689 381 ntBASIC4.03□□□□□ -1.76
SOX3P41225 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.03□□□□□ -1.76
SOX3P41225 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC4.03□□□□□ -1.76
SOX3P41225 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.03□□□□□ -1.76
SOX3P41225 TRBV8-2-201ENST00000475637 270 ntBASIC4.03□□□□□ -1.76
SOX3P41225 AL161747.1-201ENST00000480068 358 ntBASIC4.03□□□□□ -1.76
SOX3P41225 RN7SL812P-201ENST00000493791 279 ntBASIC4.03□□□□□ -1.76
SOX3P41225 AL035404.1-201ENST00000497982 568 ntBASIC4.03□□□□□ -1.76
SOX3P41225 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.03□□□□□ -1.76
SOX3P41225 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC4.03□□□□□ -1.76
SOX3P41225 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.03□□□□□ -1.76
SOX3P41225 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.03□□□□□ -1.76
SOX3P41225 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SOX3P41225 AC091163.3-201ENST00000518269 1144 ntBASIC4.03□□□□□ -1.76
SOX3P41225 MTND2P32-201ENST00000521584 1038 ntBASIC4.03□□□□□ -1.76
SOX3P41225 HMGB1P1-201ENST00000522557 636 ntBASIC4.03□□□□□ -1.76
SOX3P41225 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms