Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.67□□□□□ -1.82
HMGA1P17096 TMX2P1-201ENST00000436507 708 ntBASIC3.67□□□□□ -1.82
HMGA1P17096 RPS3AP12-201ENST00000443616 753 ntBASIC3.67□□□□□ -1.82
HMGA1P17096 AC104978.1-201ENST00000449387 391 ntBASIC3.67□□□□□ -1.82
HMGA1P17096 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.67□□□□□ -1.82
HMGA1P17096 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC3.67□□□□□ -1.82
HMGA1P17096 IGKV2-26-201ENST00000518305 343 ntBASIC3.67□□□□□ -1.82
HMGA1P17096 MIR3200-201ENST00000580767 85 ntBASIC3.67□□□□□ -1.82
HMGA1P17096 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.67□□□□□ -1.82
HMGA1P17096 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.67□□□□□ -1.82
HMGA1P17096 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.67□□□□□ -1.82
HMGA1P17096 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.67□□□□□ -1.82
HMGA1P17096 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.67□□□□□ -1.82
HMGA1P17096 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
HMGA1P17096 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.67□□□□□ -1.82
HMGA1P17096 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
HMGA1P17096 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HMGA1P17096 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
HMGA1P17096 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.67□□□□□ -1.82
HMGA1P17096 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HMGA1P17096 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
HMGA1P17096 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.66□□□□□ -1.82
HMGA1P17096 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
HMGA1P17096 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.66□□□□□ -1.82
HMGA1P17096 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HMGA1P17096 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
HMGA1P17096 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.66□□□□□ -1.82
HMGA1P17096 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.66□□□□□ -1.82
HMGA1P17096 AC005326.1-201ENST00000429197 123 ntBASIC3.66□□□□□ -1.82
HMGA1P17096 RPS20P1-201ENST00000434853 354 ntBASIC3.66□□□□□ -1.82
HMGA1P17096 AC005019.1-201ENST00000436455 431 ntBASIC3.66□□□□□ -1.82
HMGA1P17096 BX510359.1-201ENST00000456973 237 ntBASIC3.66□□□□□ -1.82
HMGA1P17096 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC3.66□□□□□ -1.82
HMGA1P17096 RPL21P10-201ENST00000463521 490 ntBASIC3.66□□□□□ -1.82
HMGA1P17096 RN7SL594P-201ENST00000470590 287 ntBASIC3.66□□□□□ -1.82
HMGA1P17096 RN7SL601P-201ENST00000471221 293 ntBASIC3.66□□□□□ -1.82
HMGA1P17096 AC084357.1-201ENST00000473404 255 ntBASIC3.66□□□□□ -1.82
HMGA1P17096 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.66□□□□□ -1.82
HMGA1P17096 AC093663.1-201ENST00000497190 394 ntBASIC3.66□□□□□ -1.82
HMGA1P17096 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC3.66□□□□□ -1.82
HMGA1P17096 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.66□□□□□ -1.82
HMGA1P17096 RNU2-27P-201ENST00000516185 142 ntBASIC3.66□□□□□ -1.82
HMGA1P17096 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC3.66□□□□□ -1.82
HMGA1P17096 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.66□□□□□ -1.82
HMGA1P17096 MIR5195-201ENST00000583555 115 ntBASIC3.66□□□□□ -1.82
HMGA1P17096 AC016590.3-201ENST00000611171 753 ntBASIC3.66□□□□□ -1.82
HMGA1P17096 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.66□□□□□ -1.82
HMGA1P17096 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HMGA1P17096 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HMGA1P17096 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.66□□□□□ -1.82
HMGA1P17096 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.66□□□□□ -1.82
HMGA1P17096 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
HMGA1P17096 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.66□□□□□ -1.82
HMGA1P17096 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HMGA1P17096 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.66□□□□□ -1.82
HMGA1P17096 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HMGA1P17096 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
HMGA1P17096 AC017007.4-201ENST00000503353 1352 ntBASIC3.65□□□□□ -1.82
HMGA1P17096 OTUD4P1-201ENST00000237841 3067 ntBASIC3.65□□□□□ -1.82
HMGA1P17096 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
HMGA1P17096 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HMGA1P17096 AL356274.2-201ENST00000624379 3752 ntBASIC3.65□□□□□ -1.82
HMGA1P17096 MIR491-201ENST00000384877 84 ntBASIC3.65□□□□□ -1.83
HMGA1P17096 RN7SKP111-201ENST00000410349 271 ntBASIC3.65□□□□□ -1.83
HMGA1P17096 RNA5SP120-201ENST00000410900 112 ntBASIC3.65□□□□□ -1.83
HMGA1P17096 MTND4P22-201ENST00000413116 1169 ntBASIC3.65□□□□□ -1.83
HMGA1P17096 AC017083.1-201ENST00000428093 483 ntBASIC3.65□□□□□ -1.83
HMGA1P17096 IFNNP1-201ENST00000429219 553 ntBASIC3.65□□□□□ -1.83
HMGA1P17096 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.65□□□□□ -1.83
HMGA1P17096 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.65□□□□□ -1.83
HMGA1P17096 ANP32BP2-201ENST00000454525 545 ntBASIC3.65□□□□□ -1.83
HMGA1P17096 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.65□□□□□ -1.83
HMGA1P17096 AC023598.1-201ENST00000472521 361 ntBASIC3.65□□□□□ -1.83
HMGA1P17096 PANCR-201ENST00000503456 493 ntTSL 5 BASIC3.65□□□□□ -1.83
HMGA1P17096 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.65□□□□□ -1.83
HMGA1P17096 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.65□□□□□ -1.83
HMGA1P17096 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC3.65□□□□□ -1.83
HMGA1P17096 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC3.65□□□□□ -1.83
HMGA1P17096 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.65□□□□□ -1.83
HMGA1P17096 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.65□□□□□ -1.83
HMGA1P17096 AC068790.5-201ENST00000602741 355 ntBASIC3.65□□□□□ -1.83
HMGA1P17096 HMGB1P50-201ENST00000605814 607 ntBASIC3.65□□□□□ -1.83
HMGA1P17096 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.65□□□□□ -1.83
HMGA1P17096 AL158062.1-201ENST00000619632 745 ntBASIC3.65□□□□□ -1.83
HMGA1P17096 AL353684.1-201ENST00000622677 1120 ntBASIC3.65□□□□□ -1.83
HMGA1P17096 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3.65□□□□□ -1.83
HMGA1P17096 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HMGA1P17096 AC012078.1-201ENST00000405035 1646 ntBASIC3.65□□□□□ -1.83
HMGA1P17096 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HMGA1P17096 AL645937.1-201ENST00000641739 1652 ntBASIC3.65□□□□□ -1.83
HMGA1P17096 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC3.64□□□□□ -1.83
HMGA1P17096 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.64□□□□□ -1.83
HMGA1P17096 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
HMGA1P17096 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
HMGA1P17096 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HMGA1P17096 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HMGA1P17096 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HMGA1P17096 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HMGA1P17096 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HMGA1P17096 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms