Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD4P09016 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
HOXD4P09016 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD4P09016 AC134882.1-201ENST00000603738 1676 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
HOXD4P09016 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD4P09016 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD4P09016 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD4P09016 RNU6-354P-201ENST00000383862 107 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 RNU6-610P-201ENST00000384264 107 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 MIR659-201ENST00000384963 97 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 MIR134-201ENST00000385258 73 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
HOXD4P09016 RPL23AP26-201ENST00000412728 464 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AL158825.1-201ENST00000414735 521 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD4P09016 AC048351.1-201ENST00000420064 602 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AC093698.1-201ENST00000423843 571 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXD4P09016 RPL21P43-201ENST00000425440 472 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD4P09016 FTH1P16-201ENST00000435241 552 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD4P09016 AC006994.1-201ENST00000438212 839 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXD4P09016 AC114495.1-201ENST00000441274 436 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXD4P09016 AC044797.1-201ENST00000445744 679 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AC239809.1-201ENST00000450470 217 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AC008379.1-201ENST00000463655 464 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXD4P09016 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC3.98□□□□□ -1.77
HOXD4P09016 AC006499.6-201ENST00000511169 607 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 RNU6-1308P-201ENST00000516817 103 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AC008694.2-201ENST00000517591 306 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AP003730.1-201ENST00000524605 285 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD4P09016 AC008083.2-201ENST00000546707 476 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC3.98□□□□□ -1.77
HOXD4P09016 AC090515.3-201ENST00000560431 315 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AC104229.1-201ENST00000561364 255 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
HOXD4P09016 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXD4P09016 RN7SL339P-201ENST00000580597 296 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AC091178.1-203ENST00000584586 279 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AC020914.4-201ENST00000597690 277 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD4P09016 AC010200.2-201ENST00000605098 235 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXD4P09016 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXD4P09016 AC018754.1-201ENST00000607486 925 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXD4P09016 AC021851.1-201ENST00000608537 1082 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AL121652.1-201ENST00000608851 448 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AC004825.2-201ENST00000616634 455 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AC008147.4-201ENST00000617570 1204 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
HOXD4P09016 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD4P09016 AC017007.4-201ENST00000503353 1352 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXD4P09016 FAM35DP-201ENST00000323387 2712 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 AC100871.1-201ENST00000507871 1456 ntBASIC3.98□□□□□ -1.77
HOXD4P09016 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD4P09016 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD4P09016 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD4P09016 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD4P09016 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD4P09016 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
HOXD4P09016 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD4P09016 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXD4P09016 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXD4P09016 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXD4P09016 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD4P09016 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD4P09016 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD4P09016 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD4P09016 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD4P09016 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD4P09016 RNU6-481P-201ENST00000384194 107 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 RNU6-1005P-201ENST00000384519 107 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 MIR921-201ENST00000401133 56 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 AL445183.3-201ENST00000414168 502 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 AC073310.1-201ENST00000423226 1033 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 MTCO2P17-201ENST00000424336 677 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 FO393414.1-201ENST00000428697 1184 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXD4P09016 AC004854.1-201ENST00000440356 349 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 EEF1A1P1-201ENST00000447052 739 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 EIF4A1P11-201ENST00000451239 222 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 RNU7-27P-201ENST00000459281 62 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 TRAV31-201ENST00000502780 342 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXD4P09016 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD4P09016 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD4P09016 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXD4P09016 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD4P09016 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC3.97□□□□□ -1.77
HOXD4P09016 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.97□□□□□ -1.77
HOXD4P09016 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD4P09016 AL360157.1-201ENST00000565962 87 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms