Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PCNPP1-201ENST00000552501 511 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AC009237.13-201ENST00000603193 276 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AC103710.4-201ENST00000609301 899 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AC138749.5-201ENST00000611461 208 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AL160394.1-201ENST00000624765 724 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 AC004076.2-201ENST00000620532 3323 ntBASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
TRIM39Q9HCM9 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 RNA5SP132-201ENST00000364725 118 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 Y_RNA.516-201ENST00000384541 124 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 U8.14-201ENST00000390843 143 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AL078595.1-201ENST00000404458 226 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 OFD1P18Y-201ENST00000420889 959 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC007161.1-204ENST00000423039 460 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 RPL36P19-201ENST00000430744 301 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC012075.1-201ENST00000436549 580 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC026410.2-201ENST00000460281 156 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC087879.1-201ENST00000474343 374 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 RN7SL809P-201ENST00000482040 297 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 RPL9P33-201ENST00000484311 566 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 PTS-202ENST00000524931 696 ntTSL 3 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 MIR4504-201ENST00000577413 92 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 MIR4801-201ENST00000582704 82 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC012616.1-201ENST00000600294 197 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC018809.2-201ENST00000602436 3823 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC006566.1-201ENST00000608943 513 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 MIR6768-201ENST00000610734 72 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AL359535.1-201ENST00000612100 1087 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC026368.1-201ENST00000614934 690 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC108479.2-201ENST00000617314 601 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AL121890.2-201ENST00000617644 465 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC138965.3-201ENST00000623875 498 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 OR52B5P-202ENST00000641118 1110 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 AC133552.1-201ENST00000569988 4007 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 CASC19-248ENST00000641674 1356 ntBASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRIM39Q9HCM9 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 144.1 ms