Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
NKX3-1Q99801 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 ZNF886P-201ENST00000450781 723 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC006511.1-201ENST00000470614 315 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC015724.1-201ENST00000478577 156 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 RPS27P23-201ENST00000487608 251 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 RPL36AP41-201ENST00000493820 306 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 SCARNA22-201ENST00000503991 125 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 GAPDHP56-201ENST00000506031 988 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC044913.1-201ENST00000557200 430 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 BGLT3-201ENST00000564523 994 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 MTND3P13-201ENST00000574391 343 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 RN7SL652P-201ENST00000577769 300 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 RPL27-207ENST00000590864 569 ntTSL 2 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AL161616.1-201ENST00000611867 286 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC018926.3-201ENST00000618841 406 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC135352.1-201ENST00000506173 1418 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 AC010928.1-201ENST00000592477 1447 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 AL592437.2-201ENST00000421655 2434 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 MFSD4BP1-201ENST00000513330 1552 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC3.93□□□□□ -1.78
NKX3-1Q99801 NXPH1-205ENST00000602349 1953 ntBASIC3.93□□□□□ -1.78
NKX3-1Q99801 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
NKX3-1Q99801 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC025263.3-201ENST00000622965 1396 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 ZFRP1-201ENST00000457579 2970 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 AL590240.1-201ENST00000334118 313 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 RNU4-51P-201ENST00000364206 140 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 OR5AW1P-201ENST00000426334 1006 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
NKX3-1Q99801 RPEP2-201ENST00000432149 701 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 ELOCP11-201ENST00000436690 332 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 ELOCP13-201ENST00000443934 329 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 ELOCP16-201ENST00000444494 332 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 CCDC75P1-201ENST00000469247 791 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC006463.2-201ENST00000473326 348 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC008897.1-201ENST00000494006 347 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC025164.1-201ENST00000496249 478 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 HPRT1P2-201ENST00000505250 544 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 STMN1P2-201ENST00000508435 439 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 IGHVIII-38-1-201ENST00000521454 282 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 AC008562.1-201ENST00000521763 330 ntBASIC3.92□□□□□ -1.78
NKX3-1Q99801 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC3.92□□□□□ -1.78
NKX3-1Q99801 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.92□□□□□ -1.78
NKX3-1Q99801 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms