Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 RPL7P4-203ENST00000430239 730 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 CYCSP43-201ENST00000438233 310 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 RPS26P56-201ENST00000444468 240 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AL513343.1-201ENST00000451818 792 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 MRPL35P4-201ENST00000453682 566 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 DDX39BP2-208ENST00000453923 258 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 RPL23AP72-201ENST00000492447 435 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 RN7SKP92-201ENST00000517266 244 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 IGKV2D-23-201ENST00000518179 286 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 OR5M2P-201ENST00000529003 936 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 OR5BC1P-201ENST00000529327 739 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AC093014.1-201ENST00000548926 724 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AC090181.2-201ENST00000602975 672 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AC011453.2-201ENST00000603737 729 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AP001033.2-201ENST00000609701 1003 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AC139769.1-204ENST00000472297 1931 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AL122126.1-201ENST00000546905 1318 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AC104446.1-201ENST00000613728 1321 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AL132640.2-201ENST00000559968 1698 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 RNA5SP307-201ENST00000362863 116 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 RNU1-32P-201ENST00000363937 159 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 OR1F12-201ENST00000402365 945 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 HMGB3P18-201ENST00000406327 590 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 RPL31P2-201ENST00000413849 377 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AL513175.1-201ENST00000431492 780 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 ELOCP8-201ENST00000439309 332 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 ELOCP15-201ENST00000442090 332 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 NPM1P49-201ENST00000448027 714 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 TPT1P12-201ENST00000448968 492 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 CYCSP42-201ENST00000450823 238 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 VN1R32P-201ENST00000452234 905 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 GAPDHP36-201ENST00000480688 918 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AC098799.1-201ENST00000504752 800 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AC139783.2-201ENST00000504847 1145 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 SNORA26.10-201ENST00000516427 141 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AC083923.1-201ENST00000523708 376 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 PHBP17-201ENST00000528576 541 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AC091488.1-201ENST00000604239 660 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AC103710.3-201ENST00000608157 948 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AC104307.1-201ENST00000616142 196 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 AC007546.2-201ENST00000623996 360 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 MFSD8-242ENST00000641690 4199 ntBASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
ZNF540Q8NDQ6 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms