Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TPTE2P3-201ENST00000441562 1189 ntBASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 AC037198.2-201ENST00000478845 733 ntBASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 RPS26P15-201ENST00000488067 348 ntBASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 RAC1P2-201ENST00000511164 579 ntBASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 AC015813.4-201ENST00000610469 179 ntBASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 AC138932.5-201ENST00000617759 563 ntBASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.53□□□□□ -1.68
CCDC88AQ3V6T2 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 OR10J6P-201ENST00000289731 930 ntBASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 VN1R51P-201ENST00000411675 945 ntBASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 AL645931.1-201ENST00000439737 410 ntBASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 VN1R25P-201ENST00000443385 738 ntBASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 VN1R40P-201ENST00000455196 941 ntBASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 AL353684.1-201ENST00000622677 1120 ntBASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 ATE1-AS1-202ENST00000636460 506 ntBASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 NANOGP6-201ENST00000429190 847 ntBASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 AC069306.1-201ENST00000507006 843 ntBASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 IGHV3-63-201ENST00000518422 341 ntBASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 AC010591.1-201ENST00000603941 649 ntBASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC88AQ3V6T2 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 MTND4P26-201ENST00000415971 1359 ntBASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 AC139713.2-215ENST00000641428 5037 ntBASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 ATP5HP2-201ENST00000433885 485 ntBASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 AL831737.1-201ENST00000441288 271 ntBASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 AC073387.1-201ENST00000453261 709 ntBASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 TMED11P-201ENST00000479478 690 ntBASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 AC103843.2-201ENST00000530523 682 ntBASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 AC009237.17-201ENST00000618111 748 ntBASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
CCDC88AQ3V6T2 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 MTND6P5-201ENST00000448266 512 ntBASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 AC233280.2-201ENST00000603917 1070 ntBASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 AL022322.2-201ENST00000624072 20397 ntBASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
CCDC88AQ3V6T2 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 RNA5SP432-201ENST00000362480 116 ntBASIC4.49□□□□□ -1.69
CCDC88AQ3V6T2 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms