Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA3P55318 AP000926.4-201ENST00000527351 454 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC2.82□□□□□ -1.96
FOXA3P55318 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXA3P55318 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXA3P55318 AC006960.3-201ENST00000561845 705 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 AC011477.5-201ENST00000586571 259 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 AC067852.4-201ENST00000590314 478 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC2.82□□□□□ -1.96
FOXA3P55318 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXA3P55318 MIR6868-201ENST00000611215 58 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 AK6-205ENST00000618980 483 ntTSL 2 BASIC2.82□□□□□ -1.96
FOXA3P55318 AC091953.3-201ENST00000623220 236 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 AP003400.2-201ENST00000624036 666 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 CDRT1-208ENST00000630868 794 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 MIR4278-201ENST00000636094 69 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA3P55318 API5-210ENST00000534600 1760 ntTSL 5 BASIC2.82□□□□□ -1.96
FOXA3P55318 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC2.81□□□□□ -1.96
FOXA3P55318 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
FOXA3P55318 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
FOXA3P55318 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
FOXA3P55318 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
FOXA3P55318 EI24P2-201ENST00000397776 1076 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AL136116.1-201ENST00000403591 381 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AL034374.1-201ENST00000406329 351 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC2.81□□□□□ -1.96
FOXA3P55318 RNU6-55P-201ENST00000411092 107 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 RNU6-954P-201ENST00000411355 107 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 PRELID3BP11-201ENST00000414230 479 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AL590139.1-201ENST00000416267 400 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC2.81□□□□□ -1.96
FOXA3P55318 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA3P55318 NPM1P24-201ENST00000428039 894 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AL158071.1-201ENST00000430315 461 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 SETP5-201ENST00000437270 562 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA3P55318 CYCSP43-201ENST00000438233 310 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA3P55318 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC2.81□□□□□ -1.96
FOXA3P55318 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC2.81□□□□□ -1.96
FOXA3P55318 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA3P55318 AC010468.1-201ENST00000461022 817 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AC010401.1-201ENST00000463867 348 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AC117394.1-201ENST00000477323 567 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AC041039.1-201ENST00000485656 536 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC2.81□□□□□ -1.96
FOXA3P55318 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA3P55318 AL389895.1-201ENST00000554127 252 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AC044860.2-201ENST00000561005 179 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC2.81□□□□□ -1.96
FOXA3P55318 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA3P55318 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC2.81□□□□□ -1.96
FOXA3P55318 AC005191.1-201ENST00000603950 358 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC2.81□□□□□ -1.96
FOXA3P55318 AC019131.2-201ENST00000609071 870 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 MIR7155-201ENST00000615925 56 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AC018445.2-201ENST00000622987 260 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC2.81□□□□□ -1.96
FOXA3P55318 AL732372.2-225ENST00000642124 456 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AP002001.2-201ENST00000529025 1469 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
FOXA3P55318 AL592494.2-201ENST00000425455 1548 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 AL137100.1-201ENST00000556703 1620 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
FOXA3P55318 AL132640.2-201ENST00000559968 1698 ntBASIC2.81□□□□□ -1.96
FOXA3P55318 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC2.81□□□□□ -1.96
FOXA3P55318 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.8□□□□□ -1.96
FOXA3P55318 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
FOXA3P55318 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC2.8□□□□□ -1.96
FOXA3P55318 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
FOXA3P55318 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
FOXA3P55318 MFF-206ENST00000392059 1710 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA3P55318 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
FOXA3P55318 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
FOXA3P55318 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
FOXA3P55318 RNU11-4P-201ENST00000391149 133 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 RPS3AP23-201ENST00000401762 784 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA3P55318 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA3P55318 RPS15AP6-201ENST00000420703 385 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 AL590762.4-201ENST00000425885 253 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 TBCAP1-201ENST00000436520 327 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 AC073264.2-201ENST00000448886 166 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA3P55318 RPL23AP24-201ENST00000458203 385 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 TAF8-207ENST00000482432 556 ntTSL 2 BASIC2.8□□□□□ -1.96
FOXA3P55318 AC078817.1-201ENST00000492623 435 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 AC020893.1-201ENST00000502452 580 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 AC023141.12-201ENST00000512399 199 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC2.8□□□□□ -1.96
FOXA3P55318 AP004242.1-201ENST00000533701 349 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 C1GALT1P1-201ENST00000548895 1089 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 AC106785.3-201ENST00000564064 847 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA3P55318 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
FOXA3P55318 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC2.8□□□□□ -1.96
FOXA3P55318 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA3P55318 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC2.8□□□□□ -1.96
FOXA3P55318 OR7E18P-201ENST00000592589 702 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms