Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 KPNA2P2-201ENST00000419546 1489 ntBASIC3.95□□□□□ -1.78
COL4A4P53420 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
COL4A4P53420 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.95□□□□□ -1.78
COL4A4P53420 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A4P53420 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A4P53420 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.95□□□□□ -1.78
COL4A4P53420 Y_RNA.510-201ENST00000384511 114 ntBASIC3.95□□□□□ -1.78
COL4A4P53420 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
COL4A4P53420 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A4P53420 AC097713.2-201ENST00000430199 356 ntBASIC3.95□□□□□ -1.78
COL4A4P53420 SETD6P1-201ENST00000444575 317 ntBASIC3.95□□□□□ -1.78
COL4A4P53420 AC025518.1-201ENST00000479856 347 ntBASIC3.95□□□□□ -1.78
COL4A4P53420 RPS3AP14-201ENST00000483907 780 ntBASIC3.95□□□□□ -1.78
COL4A4P53420 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.95□□□□□ -1.78
COL4A4P53420 BTF3L4P4-201ENST00000506381 449 ntBASIC3.95□□□□□ -1.78
COL4A4P53420 AC010285.3-201ENST00000511668 676 ntBASIC3.95□□□□□ -1.78
COL4A4P53420 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.95□□□□□ -1.78
COL4A4P53420 AC010653.1-201ENST00000571108 881 ntBASIC3.95□□□□□ -1.78
COL4A4P53420 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.95□□□□□ -1.78
COL4A4P53420 AC125494.3-201ENST00000602759 455 ntBASIC3.95□□□□□ -1.78
COL4A4P53420 AC105148.1-201ENST00000604961 409 ntBASIC3.95□□□□□ -1.78
COL4A4P53420 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A4P53420 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC3.95□□□□□ -1.78
COL4A4P53420 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A4P53420 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC3.95□□□□□ -1.78
COL4A4P53420 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC3.95□□□□□ -1.78
COL4A4P53420 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A4P53420 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
COL4A4P53420 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A4P53420 OR10J6P-201ENST00000289731 930 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 AC096638.2-201ENST00000434965 711 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 AC091862.1-201ENST00000438016 1100 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 Z75741.1-201ENST00000446793 314 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.94□□□□□ -1.78
COL4A4P53420 FTH1P9-201ENST00000513251 355 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.94□□□□□ -1.78
COL4A4P53420 AC022784.5-201ENST00000522241 437 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.94□□□□□ -1.78
COL4A4P53420 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC3.94□□□□□ -1.78
COL4A4P53420 AL359757.2-201ENST00000624309 274 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 AP000553.6-201ENST00000641242 118 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A4P53420 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
COL4A4P53420 AL356489.2-201ENST00000566968 3528 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
COL4A4P53420 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A4P53420 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A4P53420 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC3.94□□□□□ -1.78
COL4A4P53420 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A4P53420 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A4P53420 AL353743.1-202ENST00000431724 1695 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC3.94□□□□□ -1.78
COL4A4P53420 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A4P53420 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A4P53420 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.94□□□□□ -1.78
COL4A4P53420 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A4P53420 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL4A4P53420 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC3.94□□□□□ -1.78
COL4A4P53420 AC240504.1-201ENST00000395709 845 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 MTND2P11-201ENST00000423638 648 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 RPL7P44-201ENST00000424827 742 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 SNORA71B-202ENST00000439232 272 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 AL831737.1-201ENST00000441288 271 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.94□□□□□ -1.78
COL4A4P53420 RPL7P23-201ENST00000493874 747 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.94□□□□□ -1.78
COL4A4P53420 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC3.94□□□□□ -1.78
COL4A4P53420 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.94□□□□□ -1.78
COL4A4P53420 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.94□□□□□ -1.78
COL4A4P53420 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.94□□□□□ -1.78
COL4A4P53420 OR1AB1P-201ENST00000585564 761 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 AP003392.5-201ENST00000607857 415 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 AC233309.1-201ENST00000619522 751 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 OR5AC4P-202ENST00000642086 985 ntBASIC3.94□□□□□ -1.78
COL4A4P53420 AC112198.2-201ENST00000426589 6996 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
COL4A4P53420 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A4P53420 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.93□□□□□ -1.78
COL4A4P53420 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A4P53420 AC018555.1-201ENST00000567548 1980 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.93□□□□□ -1.78
COL4A4P53420 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A4P53420 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A4P53420 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A4P53420 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A4P53420 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A4P53420 REREP1Y-201ENST00000422655 198 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 AL035458.1-201ENST00000433096 585 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 REREP2Y-201ENST00000439103 200 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 AC092809.1-201ENST00000441469 474 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 AL671855.1-201ENST00000446875 1203 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 OR52Y1P-201ENST00000452418 828 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 RNU6-775P-201ENST00000459318 96 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 AC087272.1-201ENST00000523624 533 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 OR4A12P-201ENST00000530847 918 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 AC092451.2-201ENST00000538746 658 ntBASIC3.93□□□□□ -1.78
COL4A4P53420 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC3.93□□□□□ -1.78
COL4A4P53420 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms