Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.42□□□□□ -1.7
SCN4AP35499 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.42□□□□□ -1.7
SCN4AP35499 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.42□□□□□ -1.7
SCN4AP35499 AC007599.1-201ENST00000568688 1174 ntBASIC4.42□□□□□ -1.7
SCN4AP35499 MIR5004-201ENST00000579078 107 ntBASIC4.42□□□□□ -1.7
SCN4AP35499 AC068790.5-201ENST00000602741 355 ntBASIC4.42□□□□□ -1.7
SCN4AP35499 AL354976.1-201ENST00000613843 387 ntBASIC4.42□□□□□ -1.7
SCN4AP35499 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.42□□□□□ -1.7
SCN4AP35499 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SCN4AP35499 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.41□□□□□ -1.7
SCN4AP35499 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
SCN4AP35499 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.41□□□□□ -1.7
SCN4AP35499 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.41□□□□□ -1.7
SCN4AP35499 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SCN4AP35499 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SCN4AP35499 AL160275.2-201ENST00000412010 394 ntBASIC4.41□□□□□ -1.7
SCN4AP35499 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.41□□□□□ -1.7
SCN4AP35499 AC091862.1-201ENST00000438016 1100 ntBASIC4.41□□□□□ -1.7
SCN4AP35499 TMED11P-201ENST00000479478 690 ntBASIC4.41□□□□□ -1.7
SCN4AP35499 AC108941.1-201ENST00000502853 530 ntBASIC4.41□□□□□ -1.7
SCN4AP35499 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC4.41□□□□□ -1.7
SCN4AP35499 NCAPGP2-201ENST00000557911 754 ntBASIC4.41□□□□□ -1.7
SCN4AP35499 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.41□□□□□ -1.7
SCN4AP35499 MIR7112-201ENST00000616126 65 ntBASIC4.41□□□□□ -1.7
SCN4AP35499 AL669942.2-201ENST00000620352 697 ntBASIC4.41□□□□□ -1.7
SCN4AP35499 AC110801.1-201ENST00000623590 212 ntBASIC4.41□□□□□ -1.7
SCN4AP35499 AP000553.6-201ENST00000641242 118 ntBASIC4.41□□□□□ -1.7
SCN4AP35499 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SCN4AP35499 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SCN4AP35499 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
SCN4AP35499 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
SCN4AP35499 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
SCN4AP35499 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
SCN4AP35499 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
SCN4AP35499 NACA3P-201ENST00000359690 648 ntBASIC4.4□□□□□ -1.7
SCN4AP35499 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.4□□□□□ -1.7
SCN4AP35499 AC069285.2-201ENST00000440210 275 ntBASIC4.4□□□□□ -1.7
SCN4AP35499 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.4□□□□□ -1.7
SCN4AP35499 AC037198.2-201ENST00000478845 733 ntBASIC4.4□□□□□ -1.7
SCN4AP35499 AC025518.1-201ENST00000479856 347 ntBASIC4.4□□□□□ -1.7
SCN4AP35499 RPS26P15-201ENST00000488067 348 ntBASIC4.4□□□□□ -1.7
SCN4AP35499 RPL21P13-201ENST00000488305 481 ntBASIC4.4□□□□□ -1.7
SCN4AP35499 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
SCN4AP35499 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.7
SCN4AP35499 AC006386.2-201ENST00000624491 75 ntBASIC4.4□□□□□ -1.7
SCN4AP35499 AC012005.1-201ENST00000624575 75 ntBASIC4.4□□□□□ -1.7
SCN4AP35499 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.4□□□□□ -1.7
SCN4AP35499 SAMMSON-213ENST00000641336 1521 ntBASIC4.4□□□□□ -1.71
SCN4AP35499 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
SCN4AP35499 AL133383.2-201ENST00000622958 2336 ntBASIC4.4□□□□□ -1.71
SCN4AP35499 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.4□□□□□ -1.71
SCN4AP35499 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.4□□□□□ -1.71
SCN4AP35499 MIR448-201ENST00000362131 111 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 MIR93-201ENST00000385024 80 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.39□□□□□ -1.71
SCN4AP35499 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 RPF2P1-201ENST00000424137 906 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 RPL21P110-201ENST00000433345 446 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 HMGB1P16-201ENST00000447155 540 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC4.39□□□□□ -1.71
SCN4AP35499 RAC1P2-201ENST00000511164 579 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 IGHV3-63-201ENST00000518422 341 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.39□□□□□ -1.71
SCN4AP35499 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.39□□□□□ -1.71
SCN4AP35499 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.39□□□□□ -1.71
SCN4AP35499 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.39□□□□□ -1.71
SCN4AP35499 SNORA62.6-201ENST00000606322 83 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SCN4AP35499 AC016542.2-201ENST00000624201 619 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 MAPK10-303ENST00000641324 3959 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SCN4AP35499 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SCN4AP35499 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.39□□□□□ -1.71
SCN4AP35499 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SCN4AP35499 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.39□□□□□ -1.71
SCN4AP35499 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SCN4AP35499 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SCN4AP35499 RNA5SP374-201ENST00000362939 125 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.39□□□□□ -1.71
SCN4AP35499 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC4.39□□□□□ -1.71
SCN4AP35499 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.39□□□□□ -1.71
SCN4AP35499 SNORA71B-202ENST00000439232 272 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.39□□□□□ -1.71
SCN4AP35499 RPS15AP29-201ENST00000445539 400 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.39□□□□□ -1.71
SCN4AP35499 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.39□□□□□ -1.71
SCN4AP35499 S100A11P2-201ENST00000467589 312 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 RN7SL429P-201ENST00000479090 223 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 RN7SL489P-201ENST00000486185 223 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 RN7SL327P-201ENST00000488659 223 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.39□□□□□ -1.71
SCN4AP35499 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.39□□□□□ -1.71
SCN4AP35499 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SCN4AP35499 AL033523.1-201ENST00000605153 153 ntBASIC4.39□□□□□ -1.71
SCN4AP35499 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SCN4AP35499 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.39□□□□□ -1.71
SCN4AP35499 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SCN4AP35499 RN7SL853P-201ENST00000617250 223 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms