Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC5.41□□□□□ -1.54
COL3A1P02461 AC245389.1-201ENST00000605141 529 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 AL139344.1-201ENST00000605228 195 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC5.41□□□□□ -1.54
COL3A1P02461 AL353600.1-201ENST00000608148 251 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL3A1P02461 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC5.41□□□□□ -1.54
COL3A1P02461 CDRT1-208ENST00000630868 794 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.41□□□□□ -1.54
COL3A1P02461 AC083865.1-201ENST00000636634 831 ntBASIC5.41□□□□□ -1.54
COL3A1P02461 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL3A1P02461 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL3A1P02461 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL3A1P02461 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL3A1P02461 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
COL3A1P02461 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC5.41□□□□□ -1.54
COL3A1P02461 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL3A1P02461 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL3A1P02461 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.41□□□□□ -1.54
COL3A1P02461 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.4□□□□□ -1.54
COL3A1P02461 HMGB3P19-201ENST00000403971 560 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 Y_RNA.604-201ENST00000410574 102 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 Y_RNA.619-201ENST00000410951 90 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 RPS24P7-201ENST00000416921 246 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 RPL36AP36-201ENST00000418616 301 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC5.4□□□□□ -1.54
COL3A1P02461 TEX41-203ENST00000420472 765 ntTSL 3 BASIC5.4□□□□□ -1.54
COL3A1P02461 AJ239321.1-201ENST00000424255 564 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 AC010153.1-201ENST00000432862 727 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5.4□□□□□ -1.54
COL3A1P02461 UBE2D3P1-201ENST00000436669 444 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 HLA-N-201ENST00000437516 135 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC5.4□□□□□ -1.54
COL3A1P02461 RPL31P53-201ENST00000457065 348 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 SUMO2P5-201ENST00000506790 245 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC5.4□□□□□ -1.54
COL3A1P02461 NPM1P21-201ENST00000513394 762 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 SNORA76.2-201ENST00000517095 137 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 AC007991.1-201ENST00000522680 631 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 MTND4LP18-201ENST00000526864 291 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC5.4□□□□□ -1.54
COL3A1P02461 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC5.4□□□□□ -1.54
COL3A1P02461 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC5.4□□□□□ -1.54
COL3A1P02461 MTCYBP23-201ENST00000558717 1102 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC5.4□□□□□ -1.54
COL3A1P02461 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC5.4□□□□□ -1.54
COL3A1P02461 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC5.4□□□□□ -1.54
COL3A1P02461 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC5.4□□□□□ -1.54
COL3A1P02461 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.4□□□□□ -1.54
COL3A1P02461 AL355802.4-201ENST00000607635 548 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 AC099676.1-201ENST00000608886 657 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 MIR6500-201ENST00000622700 86 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC5.4□□□□□ -1.54
COL3A1P02461 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.4□□□□□ -1.54
COL3A1P02461 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.4□□□□□ -1.54
COL3A1P02461 MARK2P15-201ENST00000432204 2186 ntBASIC5.4□□□□□ -1.54
COL3A1P02461 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC5.4□□□□□ -1.54
COL3A1P02461 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL3A1P02461 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.4□□□□□ -1.55
COL3A1P02461 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
COL3A1P02461 DDX6P1-205ENST00000441966 1436 ntBASIC5.4□□□□□ -1.55
COL3A1P02461 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL3A1P02461 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC5.4□□□□□ -1.55
COL3A1P02461 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL3A1P02461 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
COL3A1P02461 GSTM3P2-201ENST00000412746 530 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 OFD1P11Y-201ENST00000418213 1177 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 PTP4A1P7-201ENST00000423476 514 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC5.39□□□□□ -1.55
COL3A1P02461 CR769776.1-201ENST00000441254 787 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 SNORA84-201ENST00000459229 133 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 SYT14P1-201ENST00000481459 721 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 MIR2116-201ENST00000517221 80 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 OR5M7P-201ENST00000526140 972 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 AP003066.2-201ENST00000529375 555 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC5.39□□□□□ -1.55
COL3A1P02461 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.39□□□□□ -1.55
COL3A1P02461 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL3A1P02461 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.39□□□□□ -1.55
COL3A1P02461 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC5.39□□□□□ -1.55
COL3A1P02461 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
COL3A1P02461 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL3A1P02461 SAMMSON-213ENST00000641336 1521 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 POMP-202ENST00000460403 1428 ntTSL 3 BASIC5.39□□□□□ -1.55
COL3A1P02461 MAPK10-253ENST00000641010 4072 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.39□□□□□ -1.55
COL3A1P02461 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL3A1P02461 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL3A1P02461 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC5.39□□□□□ -1.55
COL3A1P02461 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL3A1P02461 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL3A1P02461 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL3A1P02461 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL3A1P02461 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.39□□□□□ -1.55
COL3A1P02461 OR5H2-201ENST00000355273 945 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 SNORD116-9-201ENST00000384000 95 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 SNORD116-3-201ENST00000384287 95 ntBASIC5.39□□□□□ -1.55
COL3A1P02461 SNORD116-7-201ENST00000384404 95 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms