Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CCSER1Q9C0I3 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 RPPH1-201ENST00000516869 333 ntBASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 C1QBPP2-201ENST00000528754 825 ntBASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCSER1Q9C0I3 AL161938.1-201ENST00000569833 2180 ntBASIC21.64■■□□□ 1.06
CCSER1Q9C0I3 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCSER1Q9C0I3 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCSER1Q9C0I3 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.64■■□□□ 1.05
CCSER1Q9C0I3 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCSER1Q9C0I3 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCSER1Q9C0I3 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.62■■□□□ 1.05
CCSER1Q9C0I3 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCSER1Q9C0I3 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCSER1Q9C0I3 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCSER1Q9C0I3 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.62■■□□□ 1.05
CCSER1Q9C0I3 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms