Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 AL589743.5-201ENST00000616611 1050 ntBASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC28BQ9BUN5 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 AL355472.2-201ENST00000422958 438 ntBASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 NTF6G-201ENST00000591094 616 ntBASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 WIZP1-201ENST00000531444 2299 ntBASIC18.79■□□□□ 0.6
CCDC28BQ9BUN5 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 TFP1-202ENST00000475455 1573 ntBASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC28BQ9BUN5 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 MIR638-201ENST00000385237 100 ntBASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 AC069236.1-201ENST00000604339 616 ntBASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CCDC28BQ9BUN5 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.77■□□□□ 0.59
CCDC28BQ9BUN5 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC28BQ9BUN5 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC28BQ9BUN5 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
CCDC28BQ9BUN5 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.77■□□□□ 0.59
CCDC28BQ9BUN5 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms