Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp11Q99K46 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Usp11Q99K46 Gm9731-201ENSMUST00000209480 747 ntBASIC17.46■□□□□ 0.39
Usp11Q99K46 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Usp11Q99K46 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Usp11Q99K46 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp11Q99K46 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Usp11Q99K46 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Usp11Q99K46 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Usp11Q99K46 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Usp11Q99K46 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Gm16499-203ENSMUST00000204633 2177 ntBASIC17.45■□□□□ 0.38
Usp11Q99K46 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Usp11Q99K46 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Usp11Q99K46 Gm17661-201ENSMUST00000170317 270 ntBASIC17.45■□□□□ 0.38
Usp11Q99K46 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Usp11Q99K46 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Usp11Q99K46 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.45■□□□□ 0.38
Usp11Q99K46 Gm43353-201ENSMUST00000199224 1295 ntBASIC17.45■□□□□ 0.38
Usp11Q99K46 Gm43799-201ENSMUST00000201845 579 ntBASIC17.45■□□□□ 0.38
Usp11Q99K46 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Usp11Q99K46 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Usp11Q99K46 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC17.45■□□□□ 0.38
Usp11Q99K46 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Usp11Q99K46 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp11Q99K46 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Usp11Q99K46 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Gm13559-201ENSMUST00000120476 863 ntBASIC17.44■□□□□ 0.38
Usp11Q99K46 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Usp11Q99K46 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC17.44■□□□□ 0.38
Usp11Q99K46 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Usp11Q99K46 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Usp11Q99K46 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC17.44■□□□□ 0.38
Usp11Q99K46 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC17.44■□□□□ 0.38
Usp11Q99K46 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp11Q99K46 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.44■□□□□ 0.38
Usp11Q99K46 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC17.44■□□□□ 0.38
Usp11Q99K46 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC17.44■□□□□ 0.38
Usp11Q99K46 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
Usp11Q99K46 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Usp11Q99K46 Gm7791-201ENSMUST00000219066 539 ntBASIC17.43■□□□□ 0.38
Usp11Q99K46 Il3ra-202ENSMUST00000223589 738 ntBASIC17.43■□□□□ 0.38
Usp11Q99K46 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Usp11Q99K46 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC17.43■□□□□ 0.38
Usp11Q99K46 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC17.43■□□□□ 0.38
Usp11Q99K46 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp11Q99K46 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Usp11Q99K46 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp11Q99K46 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp11Q99K46 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
Usp11Q99K46 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Usp11Q99K46 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Usp11Q99K46 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp11Q99K46 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Usp11Q99K46 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Usp11Q99K46 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms