Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC12.03□□□□□ -0.48
HSPG2P98160 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
HSPG2P98160 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC12.03□□□□□ -0.48
HSPG2P98160 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
HSPG2P98160 GGCT-205ENST00000409436 954 ntTSL 3 BASIC12.02□□□□□ -0.48
HSPG2P98160 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC12.02□□□□□ -0.48
HSPG2P98160 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC12.02□□□□□ -0.48
HSPG2P98160 ME2-208ENST00000638937 2471 ntTSL 5 BASIC12.02□□□□□ -0.48
HSPG2P98160 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
HSPG2P98160 AL031284.1-201ENST00000419297 478 ntBASIC12.02□□□□□ -0.49
HSPG2P98160 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC12.02□□□□□ -0.49
HSPG2P98160 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC12.02□□□□□ -0.49
HSPG2P98160 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
HSPG2P98160 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.49
HSPG2P98160 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC12.02□□□□□ -0.49
HSPG2P98160 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 TSPY22P-201ENST00000427496 604 ntBASIC12.02□□□□□ -0.49
HSPG2P98160 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC12.02□□□□□ -0.49
HSPG2P98160 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC12.02□□□□□ -0.49
HSPG2P98160 AC138894.3-201ENST00000603787 634 ntBASIC12.02□□□□□ -0.49
HSPG2P98160 KRT16P6-202ENST00000425692 1426 ntBASIC12.02□□□□□ -0.49
HSPG2P98160 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC12.02□□□□□ -0.49
HSPG2P98160 RPSAP43-201ENST00000402237 625 ntBASIC12.02□□□□□ -0.49
HSPG2P98160 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC12.02□□□□□ -0.49
HSPG2P98160 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC12.02□□□□□ -0.49
HSPG2P98160 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC12.02□□□□□ -0.49
HSPG2P98160 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 CCNC-219ENST00000627680 896 ntTSL 5 BASIC12.02□□□□□ -0.49
HSPG2P98160 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.49
HSPG2P98160 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HSPG2P98160 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC12.01□□□□□ -0.49
HSPG2P98160 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HSPG2P98160 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HSPG2P98160 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HSPG2P98160 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HSPG2P98160 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HSPG2P98160 KRT18P67-201ENST00000432816 1264 ntBASIC12.01□□□□□ -0.49
HSPG2P98160 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC12.01□□□□□ -0.49
HSPG2P98160 RNPS1P1-201ENST00000507437 918 ntBASIC12.01□□□□□ -0.49
HSPG2P98160 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC12.01□□□□□ -0.49
HSPG2P98160 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC12.01□□□□□ -0.49
HSPG2P98160 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC12.01□□□□□ -0.49
HSPG2P98160 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC12.01□□□□□ -0.49
HSPG2P98160 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC12.01□□□□□ -0.49
HSPG2P98160 MIR7706-201ENST00000613747 67 ntBASIC12.01□□□□□ -0.49
HSPG2P98160 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC12.01□□□□□ -0.49
HSPG2P98160 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HSPG2P98160 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
HSPG2P98160 BUB3-202ENST00000368859 667 ntTSL 3 BASIC12.01□□□□□ -0.49
HSPG2P98160 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HSPG2P98160 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HSPG2P98160 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HSPG2P98160 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC12.01□□□□□ -0.49
HSPG2P98160 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HSPG2P98160 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
HSPG2P98160 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
HSPG2P98160 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC12.01□□□□□ -0.49
HSPG2P98160 ABR-204ENST00000543210 1049 ntTSL 2 BASIC12.01□□□□□ -0.49
HSPG2P98160 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC12.01□□□□□ -0.49
HSPG2P98160 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC12.01□□□□□ -0.49
HSPG2P98160 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC12.01□□□□□ -0.49
HSPG2P98160 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC12.01□□□□□ -0.49
HSPG2P98160 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
HSPG2P98160 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HSPG2P98160 URGCP-206ENST00000446958 365 ntTSL 2 BASIC12□□□□□ -0.49
HSPG2P98160 AC034232.1-201ENST00000506026 1064 ntBASIC12□□□□□ -0.49
HSPG2P98160 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC12□□□□□ -0.49
HSPG2P98160 TP73-AS1-207ENST00000624167 988 ntBASIC12□□□□□ -0.49
HSPG2P98160 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC12□□□□□ -0.49
HSPG2P98160 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HSPG2P98160 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HSPG2P98160 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC12□□□□□ -0.49
HSPG2P98160 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
HSPG2P98160 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
HSPG2P98160 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC12□□□□□ -0.49
HSPG2P98160 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
HSPG2P98160 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HSPG2P98160 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC12□□□□□ -0.49
HSPG2P98160 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC12□□□□□ -0.49
HSPG2P98160 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
HSPG2P98160 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
HSPG2P98160 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC12□□□□□ -0.49
HSPG2P98160 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HSPG2P98160 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC12□□□□□ -0.49
HSPG2P98160 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HSPG2P98160 SEC1P-202ENST00000473944 940 ntBASIC12□□□□□ -0.49
HSPG2P98160 NMU-202ENST00000505262 693 ntTSL 3 BASIC12□□□□□ -0.49
HSPG2P98160 IGHV3-22-201ENST00000520721 359 ntBASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms