Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC068724.1-201ENST00000487100 792 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 RPL7P38-201ENST00000488396 739 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 IGLV2-34-201ENST00000490007 283 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 ARL4AP1-201ENST00000503220 705 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 GAPDHP56-201ENST00000506031 988 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.24□□□□□ -1.57
TDP1Q9NUW8 AC010424.1-201ENST00000506336 297 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 RNU6-1261P-201ENST00000517194 104 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 AC106038.2-201ENST00000520706 568 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
TDP1Q9NUW8 AC092851.1-201ENST00000535964 478 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 BNIP3P1-201ENST00000547295 580 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 AC093519.1-201ENST00000566109 298 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 MIR4330-201ENST00000579077 105 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 RSL24D1P11-201ENST00000591045 491 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 AC091946.2-201ENST00000606105 291 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 AC023813.4-201ENST00000607580 580 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 AL354760.1-201ENST00000608357 643 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 AC103591.3-201ENST00000608684 209 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
TDP1Q9NUW8 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
TDP1Q9NUW8 TRIM51GP-201ENST00000534741 1350 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.24□□□□□ -1.57
TDP1Q9NUW8 CDR1-202ENST00000625883 1485 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
TDP1Q9NUW8 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
TDP1Q9NUW8 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
TDP1Q9NUW8 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.24□□□□□ -1.57
TDP1Q9NUW8 SDAD1P1-202ENST00000524156 2051 ntBASIC5.24□□□□□ -1.57
TDP1Q9NUW8 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC009313.2-201ENST00000417893 1941 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 Y_RNA.18-201ENST00000362461 102 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 RNVU1-6-201ENST00000364688 164 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 SNORA2.3-201ENST00000383920 135 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 RPS15AP38-201ENST00000413110 372 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC092634.6-201ENST00000418558 192 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 NIPA2P1-201ENST00000426223 976 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 CCNB1IP1P2-201ENST00000432876 818 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 MED28P3-201ENST00000444288 531 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AP000936.2-201ENST00000447151 681 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC090804.1-201ENST00000448870 490 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 TCEA1P1-201ENST00000449716 880 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 BX842559.2-201ENST00000451418 605 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 GYG1P1-201ENST00000460864 698 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC063943.1-201ENST00000465434 453 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 RPL21P71-201ENST00000465598 459 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC104689.1-201ENST00000473356 768 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC072039.1-201ENST00000477611 581 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 MRPS33P2-201ENST00000507850 322 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 RPL7L1P13-201ENST00000511702 739 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 OR7H2P-201ENST00000513483 306 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 MTCO1P30-201ENST00000515244 580 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 RNY4P37-201ENST00000516225 96 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 Y_RNA.695-201ENST00000516715 107 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 SNORA48.10-201ENST00000516965 160 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 ROCK1P1-201ENST00000573767 549 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 MIR4270-201ENST00000581799 70 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AL133243.1-201ENST00000614487 366 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 CR392039.4-201ENST00000624968 501 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC127502.3-201ENST00000636170 1206 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 OR2L1P-202ENST00000641567 1023 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC134882.1-201ENST00000603738 1676 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AL022311.1-201ENST00000623726 19416 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.23□□□□□ -1.57
TDP1Q9NUW8 AC092162.3-201ENST00000624511 1624 ntBASIC5.23□□□□□ -1.57
TDP1Q9NUW8 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms