Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 MTCO1P49-201ENST00000523429 802 ntBASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 AC105233.3-201ENST00000531125 744 ntBASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 MIR4429-201ENST00000580105 73 ntBASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 AC068790.5-201ENST00000602741 355 ntBASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 AP004607.9-201ENST00000618202 316 ntBASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 FP325313.1-201ENST00000638228 703 ntBASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
TM9SF3Q9HD45 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 AC007685.1-201ENST00000329806 452 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 RNA5SP130-201ENST00000364431 114 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 RNA5SP513-201ENST00000364648 118 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 RNU6-152P-201ENST00000384037 107 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 CCNB2P1-201ENST00000399411 1150 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 RN7SKP202-201ENST00000410439 330 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 RN7SKP182-201ENST00000410772 298 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 LINC01881-201ENST00000416103 412 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 AL389915.1-201ENST00000422463 466 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 AC073335.1-201ENST00000427776 363 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 NPM1P34-201ENST00000428821 893 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 ZNF33CP-201ENST00000432492 2030 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 DDX39BP2-208ENST00000453923 258 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 AC092691.2-201ENST00000461787 803 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 AC099522.1-202ENST00000514718 367 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 AC023632.4-201ENST00000517783 191 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 MIR4286-201ENST00000580651 93 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 AC010201.1-201ENST00000605051 540 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 RNU4-89P-201ENST00000607443 133 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 AC105429.2-201ENST00000610567 517 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 uc_338.32-201ENST00000615087 172 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 U6.48-201ENST00000618523 106 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 AC008725.1-201ENST00000605123 2263 ntBASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
TM9SF3Q9HD45 AC027290.2-201ENST00000623210 18662 ntBASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 HNRNPDP2-201ENST00000406475 478 ntBASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 AC108032.1-201ENST00000416706 207 ntBASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 RPL7P2-201ENST00000427639 268 ntBASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 AC008065.1-201ENST00000428525 348 ntBASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 PPIAP3-201ENST00000450588 505 ntBASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 RN7SL132P-201ENST00000478131 296 ntBASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 AC107398.1-201ENST00000486904 505 ntBASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 SNX5P1-201ENST00000505757 1041 ntBASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 BNIP3P22-201ENST00000593399 556 ntBASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 AL160290.3-201ENST00000604869 165 ntBASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 MIR6875-201ENST00000617506 72 ntBASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 AC243756.2-201ENST00000618406 463 ntBASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 AL356863.1-201ENST00000623378 1080 ntBASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
TM9SF3Q9HD45 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms