Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 DNAJC19P6-201ENST00000401853 280 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 EIF4A1P3-201ENST00000411521 244 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC092745.2-202ENST00000411880 369 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 FABP5P3-201ENST00000437960 408 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 CBX1P4-201ENST00000439415 457 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 CDC27P1-201ENST00000445384 715 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC068135.1-201ENST00000446164 246 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AL050341.1-201ENST00000447743 313 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 VN1R32P-201ENST00000452234 905 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AL354710.1-201ENST00000453641 246 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AL445433.1-201ENST00000457507 257 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 RPL23AP37-201ENST00000479658 549 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 RNA5SP360-201ENST00000516555 118 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AL121594.4-201ENST00000556211 1196 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 RN7SL622P-201ENST00000585292 275 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 OR1AB1P-201ENST00000585564 761 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC245884.10-201ENST00000597355 337 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AL591034.3-201ENST00000605511 685 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC243654.2-201ENST00000612843 443 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC016597.2-201ENST00000613256 341 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AL512427.1-201ENST00000618593 349 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC023510.2-201ENST00000622162 746 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC091905.2-201ENST00000623143 306 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AC138907.10-201ENST00000623708 983 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AP001642.1-201ENST00000624727 2117 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 NXPH1-205ENST00000602349 1953 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 AL133268.1-201ENST00000405676 1401 ntBASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
CCDC3Q9BQI4 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AC022031.1-201ENST00000585985 2593 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AL118496.1-201ENST00000440201 1812 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 RNU1-64P-201ENST00000365443 163 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 MIR921-201ENST00000401133 56 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AL022722.2-201ENST00000402519 180 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 HMGB3P18-201ENST00000406327 590 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 OR4C10P-201ENST00000434991 931 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AC002542.1-201ENST00000440683 193 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 RPS7P7-201ENST00000463499 571 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AC104982.1-201ENST00000478775 574 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 WDR78-207ENST00000488333 613 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 TRAV8-5-201ENST00000537369 341 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AC106785.1-201ENST00000565935 262 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AC018552.3-201ENST00000567416 561 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 BNIP3P40-201ENST00000596017 556 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 EIF1P6-201ENST00000600054 334 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AC123786.2-201ENST00000603459 275 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AC090948.2-201ENST00000607363 564 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AC140479.6-201ENST00000633535 357 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AC013437.2-201ENST00000639587 677 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 AL672167.1-203ENST00000641299 2975 ntBASIC4.28□□□□□ -1.72
CCDC3Q9BQI4 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms