Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC008802.1-201ENST00000519121 791 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 SOX5P1-201ENST00000524155 1127 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 ZNF192P1-203ENST00000565888 810 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 MIR4284-201ENST00000578924 81 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC007566.2-201ENST00000603642 413 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 OR2BH1P-201ENST00000608850 864 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 FAM27B-201ENST00000610601 213 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 AC048347.1-201ENST00000624621 427 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 SEPT7P7-201ENST00000420492 1301 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 USP8P1-201ENST00000494673 3183 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 MTCO1P18-201ENST00000455518 1419 ntBASIC4.12□□□□□ -1.75
ZNF540Q8NDQ6 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 PABPC1P7-201ENST00000413177 1513 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 SNORA7.2-201ENST00000364446 145 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 MTCYBP24-201ENST00000420387 1106 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC009480.2-201ENST00000422916 432 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 RPL6P5-201ENST00000445678 828 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AL162591.2-201ENST00000449634 317 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC233982.1-201ENST00000451247 436 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC010326.1-201ENST00000462726 602 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 NDUFA5P9-201ENST00000472609 340 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 RPL31P13-201ENST00000484151 370 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC108043.1-201ENST00000512696 574 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC103833.1-201ENST00000517442 172 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 UBTFL9-201ENST00000534504 1148 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AP001880.2-201ENST00000538233 448 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 CKS1BP1-201ENST00000555221 240 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC135178.6-201ENST00000605314 398 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC079791.1-201ENST00000605356 973 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AL023583.1-201ENST00000607518 1143 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AP000346.3-201ENST00000622821 210 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 MTND5P11-201ENST00000511037 1812 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 GABPAP-201ENST00000419271 1356 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 AC083899.2-201ENST00000423285 1376 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 NCLP2-201ENST00000416078 1462 ntBASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.11□□□□□ -1.75
ZNF540Q8NDQ6 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 OR4K15-201ENST00000305051 1216 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 RNU6-252P-201ENST00000363232 107 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 MIR607-201ENST00000385241 96 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 HSPE1P26-201ENST00000405341 275 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 RNA5SP39-201ENST00000411245 120 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.1□□□□□ -1.75
ZNF540Q8NDQ6 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms