Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC3.38□□□□□ -1.87
FOXF1Q12946 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC3.38□□□□□ -1.87
FOXF1Q12946 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.38□□□□□ -1.87
FOXF1Q12946 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.38□□□□□ -1.87
FOXF1Q12946 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
FOXF1Q12946 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
FOXF1Q12946 AL133412.1-201ENST00000380194 2992 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
FOXF1Q12946 AC009229.4-201ENST00000623854 1947 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.37□□□□□ -1.87
FOXF1Q12946 U8.11-201ENST00000384699 133 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 U8.12-201ENST00000384701 133 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.37□□□□□ -1.87
FOXF1Q12946 AC025750.1-201ENST00000399891 379 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 AL590704.1-201ENST00000402856 794 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 AL445189.1-201ENST00000405722 338 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 HSPE1P8-201ENST00000406997 288 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 MIR1183-201ENST00000408856 89 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.37□□□□□ -1.87
FOXF1Q12946 KCTD10P1-201ENST00000434203 625 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC3.37□□□□□ -1.87
FOXF1Q12946 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.37□□□□□ -1.87
FOXF1Q12946 DNAJC19P1-201ENST00000455312 319 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 U8.18-201ENST00000459285 133 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 EIF2S2P4-201ENST00000461070 984 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 APOOP2-201ENST00000461561 539 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 AP002371.1-201ENST00000463604 433 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 RN7SKP209-201ENST00000516888 304 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.37□□□□□ -1.87
FOXF1Q12946 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.37□□□□□ -1.87
FOXF1Q12946 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.37□□□□□ -1.87
FOXF1Q12946 AC092747.2-201ENST00000545069 983 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 AC008011.1-201ENST00000545989 227 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.37□□□□□ -1.87
FOXF1Q12946 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.37□□□□□ -1.87
FOXF1Q12946 AC006960.3-201ENST00000561845 705 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 CD24P2-201ENST00000565486 219 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 AL163642.2-201ENST00000604722 1019 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.37□□□□□ -1.87
FOXF1Q12946 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC3.37□□□□□ -1.87
FOXF1Q12946 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
FOXF1Q12946 NCAPGP1-201ENST00000505112 1814 ntBASIC3.37□□□□□ -1.87
FOXF1Q12946 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.37□□□□□ -1.87
FOXF1Q12946 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.37□□□□□ -1.87
FOXF1Q12946 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
FOXF1Q12946 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
FOXF1Q12946 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.37□□□□□ -1.87
FOXF1Q12946 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
FOXF1Q12946 SLC2A3P1-201ENST00000519666 1451 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
FOXF1Q12946 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
FOXF1Q12946 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
FOXF1Q12946 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.36□□□□□ -1.87
FOXF1Q12946 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
FOXF1Q12946 HMGN2P8-201ENST00000391458 268 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 AC007066.1-201ENST00000392902 381 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 RPL7P60-201ENST00000397636 735 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 RN7SKP159-201ENST00000410657 292 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 AC009302.1-201ENST00000417147 390 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 HMGB3P20-201ENST00000417997 600 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 OR6K4P-201ENST00000423179 955 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 IFNNP1-201ENST00000429219 553 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.36□□□□□ -1.87
FOXF1Q12946 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
FOXF1Q12946 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC3.36□□□□□ -1.87
FOXF1Q12946 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.36□□□□□ -1.87
FOXF1Q12946 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC3.36□□□□□ -1.87
FOXF1Q12946 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.36□□□□□ -1.87
FOXF1Q12946 RNU1-45P-201ENST00000517191 141 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC3.36□□□□□ -1.87
FOXF1Q12946 AL121839.1-201ENST00000556233 1185 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 MIR5187-201ENST00000583479 76 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC3.36□□□□□ -1.87
FOXF1Q12946 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.36□□□□□ -1.87
FOXF1Q12946 AC110741.2-201ENST00000605278 268 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 AC067838.1-201ENST00000606064 577 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.36□□□□□ -1.87
FOXF1Q12946 AP000553.6-201ENST00000641242 118 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
FOXF1Q12946 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
FOXF1Q12946 RPS4XP5-202ENST00000449995 1334 ntBASIC3.36□□□□□ -1.87
FOXF1Q12946 AC006504.1-201ENST00000562493 3666 ntBASIC3.35□□□□□ -1.87
FOXF1Q12946 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
FOXF1Q12946 AC095050.2-201ENST00000510748 1458 ntBASIC3.35□□□□□ -1.87
FOXF1Q12946 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.35□□□□□ -1.87
FOXF1Q12946 LINC00561-201ENST00000565815 2738 ntBASIC3.35□□□□□ -1.87
FOXF1Q12946 RNU6-1263P-201ENST00000384601 106 ntBASIC3.35□□□□□ -1.87
FOXF1Q12946 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
FOXF1Q12946 ATP5F1P4-201ENST00000397288 746 ntBASIC3.35□□□□□ -1.87
FOXF1Q12946 RN7SKP202-201ENST00000410439 330 ntBASIC3.35□□□□□ -1.87
FOXF1Q12946 SMC4P1-201ENST00000414479 527 ntBASIC3.35□□□□□ -1.87
FOXF1Q12946 AL158073.1-201ENST00000426848 1104 ntBASIC3.35□□□□□ -1.87
FOXF1Q12946 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
FOXF1Q12946 AL365396.1-201ENST00000430854 671 ntBASIC3.35□□□□□ -1.87
FOXF1Q12946 NDUFB1P1-201ENST00000435191 180 ntBASIC3.35□□□□□ -1.87
FOXF1Q12946 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.35□□□□□ -1.87
FOXF1Q12946 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
FOXF1Q12946 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.35□□□□□ -1.87
FOXF1Q12946 NOTCH2P1-201ENST00000443481 624 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms