Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 RPS4XP4-201ENST00000443195 763 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 AC025181.1-201ENST00000477507 416 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 OR52A4P-202ENST00000481634 799 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 AC093840.1-201ENST00000511599 336 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.9□□□□□ -1.79
PKNOX1P55347 IGKV2D-10-201ENST00000520194 281 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.9□□□□□ -1.79
PKNOX1P55347 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.9□□□□□ -1.79
PKNOX1P55347 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC3.9□□□□□ -1.79
PKNOX1P55347 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC3.9□□□□□ -1.79
PKNOX1P55347 MIR4512-201ENST00000583257 77 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 MIR5096-201ENST00000583713 70 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC3.9□□□□□ -1.79
PKNOX1P55347 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.9□□□□□ -1.79
PKNOX1P55347 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PKNOX1P55347 AC006116.5-201ENST00000591936 559 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 VN1R79P-201ENST00000593540 513 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 ABI1P1-201ENST00000603375 1120 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 AC243654.2-201ENST00000612843 443 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 AL591424.2-201ENST00000617023 128 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 AL121890.3-201ENST00000618494 516 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 MIR8059-201ENST00000620427 81 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 MIR6730-201ENST00000622213 67 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 MIR3653-201ENST00000625572 110 ntBASIC3.9□□□□□ -1.79
PKNOX1P55347 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.9□□□□□ -1.79
PKNOX1P55347 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.9□□□□□ -1.79
PKNOX1P55347 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PKNOX1P55347 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.9□□□□□ -1.79
PKNOX1P55347 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.79
PKNOX1P55347 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PKNOX1P55347 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.9□□□□□ -1.79
PKNOX1P55347 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PKNOX1P55347 LARP1BP1-201ENST00000506036 1359 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PKNOX1P55347 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PKNOX1P55347 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
PKNOX1P55347 SNORA62.2-201ENST00000364672 152 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 SNORD51.1-201ENST00000365405 77 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
PKNOX1P55347 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
PKNOX1P55347 HSPE1P12-201ENST00000412576 301 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 RPL7AP73-201ENST00000413490 353 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.89□□□□□ -1.79
PKNOX1P55347 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.89□□□□□ -1.79
PKNOX1P55347 MTND4P24-201ENST00000424002 397 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 AL138785.1-201ENST00000425821 331 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 MTND4LP7-201ENST00000431728 294 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 ZFAND6P1-201ENST00000434138 605 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 HMGB1P37-201ENST00000439613 609 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 RPL7P31-201ENST00000450192 724 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 UQCRHP4-201ENST00000471686 272 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC3.89□□□□□ -1.79
PKNOX1P55347 RPS27AP13-201ENST00000498403 237 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC3.89□□□□□ -1.79
PKNOX1P55347 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC3.89□□□□□ -1.79
PKNOX1P55347 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.89□□□□□ -1.79
PKNOX1P55347 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
PKNOX1P55347 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.89□□□□□ -1.79
PKNOX1P55347 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC3.89□□□□□ -1.79
PKNOX1P55347 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.89□□□□□ -1.79
PKNOX1P55347 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC3.89□□□□□ -1.79
PKNOX1P55347 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC3.89□□□□□ -1.79
PKNOX1P55347 AC010680.3-201ENST00000604215 520 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 AC114781.5-201ENST00000615297 108 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 AP000843.1-201ENST00000624880 701 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 AL139811.1-201ENST00000424779 2299 ntBASIC3.89□□□□□ -1.79
PKNOX1P55347 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PKNOX1P55347 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
PKNOX1P55347 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.89□□□□□ -1.79
PKNOX1P55347 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.88□□□□□ -1.79
PKNOX1P55347 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.88□□□□□ -1.79
PKNOX1P55347 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PKNOX1P55347 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PKNOX1P55347 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PKNOX1P55347 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
PKNOX1P55347 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PKNOX1P55347 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC3.88□□□□□ -1.79
PKNOX1P55347 RNU1-18P-201ENST00000363062 164 ntBASIC3.88□□□□□ -1.79
PKNOX1P55347 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PKNOX1P55347 RNU6-452P-201ENST00000384406 107 ntBASIC3.88□□□□□ -1.79
PKNOX1P55347 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
PKNOX1P55347 HMGN2P8-201ENST00000391458 268 ntBASIC3.88□□□□□ -1.79
PKNOX1P55347 MIR1183-201ENST00000408856 89 ntBASIC3.88□□□□□ -1.79
PKNOX1P55347 AC108032.1-201ENST00000416706 207 ntBASIC3.88□□□□□ -1.79
PKNOX1P55347 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC3.88□□□□□ -1.79
PKNOX1P55347 AC245028.1-201ENST00000423259 256 ntBASIC3.88□□□□□ -1.79
PKNOX1P55347 AC093698.1-201ENST00000423843 571 ntBASIC3.88□□□□□ -1.79
PKNOX1P55347 AC068287.1-201ENST00000430283 295 ntBASIC3.88□□□□□ -1.79
PKNOX1P55347 ZNF965P-201ENST00000432501 817 ntBASIC3.88□□□□□ -1.79
PKNOX1P55347 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.88□□□□□ -1.79
PKNOX1P55347 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC3.88□□□□□ -1.79
PKNOX1P55347 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC3.88□□□□□ -1.79
PKNOX1P55347 AP000926.1-201ENST00000479573 241 ntBASIC3.88□□□□□ -1.79
PKNOX1P55347 AC091167.1-201ENST00000492017 396 ntBASIC3.88□□□□□ -1.79
PKNOX1P55347 OR9N1P-202ENST00000494289 481 ntBASIC3.88□□□□□ -1.79
PKNOX1P55347 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PKNOX1P55347 AC005798.1-201ENST00000513715 387 ntBASIC3.88□□□□□ -1.79
PKNOX1P55347 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PKNOX1P55347 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.88□□□□□ -1.79
PKNOX1P55347 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms