Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
PTPN4P29074 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN4P29074 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN4P29074 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
PTPN4P29074 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PTPN4P29074 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.26□□□□□ -1.73
PTPN4P29074 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
PTPN4P29074 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTPN4P29074 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTPN4P29074 RNA5SP322-201ENST00000363617 119 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 RNA5SP479-201ENST00000364858 117 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC4.26□□□□□ -1.73
PTPN4P29074 RNU1-89P-201ENST00000384592 164 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 AC019070.1-201ENST00000415008 1024 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.26□□□□□ -1.73
PTPN4P29074 RBMY1KP-201ENST00000423480 476 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 MTATP6P11-201ENST00000428071 670 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 AP001324.1-201ENST00000428553 399 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 RPL7P4-203ENST00000430239 730 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.26□□□□□ -1.73
PTPN4P29074 FTH1P16-201ENST00000435241 552 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 MTND4P15-201ENST00000437913 1033 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.26□□□□□ -1.73
PTPN4P29074 RPL23AP89-201ENST00000439324 255 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 TPTE2P3-201ENST00000441562 1189 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 AC012671.1-201ENST00000451912 203 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 AL645939.1-201ENST00000453429 797 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.26□□□□□ -1.73
PTPN4P29074 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTPN4P29074 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.26□□□□□ -1.73
PTPN4P29074 PRELID3BP7-201ENST00000503606 469 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 AC108145.1-201ENST00000503770 153 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 AC109458.1-201ENST00000508858 316 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.26□□□□□ -1.73
PTPN4P29074 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.26□□□□□ -1.73
PTPN4P29074 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.26□□□□□ -1.73
PTPN4P29074 OR8G5-201ENST00000524943 1041 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.26□□□□□ -1.73
PTPN4P29074 POLR2KP1-201ENST00000553226 168 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4.26□□□□□ -1.73
PTPN4P29074 OR4U1P-201ENST00000554958 912 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 AC025918.2-201ENST00000558683 763 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 BNIP3P5-201ENST00000562290 498 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.26□□□□□ -1.73
PTPN4P29074 AC069366.1-201ENST00000583159 838 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC4.26□□□□□ -1.73
PTPN4P29074 AC023043.4-201ENST00000612081 449 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTPN4P29074 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.26□□□□□ -1.73
PTPN4P29074 AC024341.1-201ENST00000526444 1552 ntBASIC4.26□□□□□ -1.73
PTPN4P29074 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
PTPN4P29074 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
PTPN4P29074 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTPN4P29074 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PTPN4P29074 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
PTPN4P29074 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTPN4P29074 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTPN4P29074 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
PTPN4P29074 SNORD66.1-201ENST00000391230 76 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 MIR1193-201ENST00000408109 78 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 SNORA3C-201ENST00000408792 125 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.25□□□□□ -1.73
PTPN4P29074 AC114814.2-201ENST00000419195 485 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 RPL17P36-201ENST00000420302 549 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.25□□□□□ -1.73
PTPN4P29074 FO393419.3-201ENST00000428741 282 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.25□□□□□ -1.73
PTPN4P29074 PTP4A1P3-201ENST00000433661 420 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 CEACAMP1-201ENST00000434624 1035 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC4.25□□□□□ -1.73
PTPN4P29074 ACTR3P2-201ENST00000439585 1257 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 AL353093.1-201ENST00000441292 436 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.25□□□□□ -1.73
PTPN4P29074 NDUFS5P3-201ENST00000450668 321 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 RPL7P32-201ENST00000457119 744 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 RN7SL98P-201ENST00000462271 300 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 NFU1-207ENST00000462320 558 ntTSL 4 BASIC4.25□□□□□ -1.73
PTPN4P29074 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
PTPN4P29074 HMGB1P21-201ENST00000502313 581 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.25□□□□□ -1.73
PTPN4P29074 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PTPN4P29074 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.25□□□□□ -1.73
PTPN4P29074 SNORA31.13-201ENST00000516624 135 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.25□□□□□ -1.73
PTPN4P29074 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.25□□□□□ -1.73
PTPN4P29074 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.25□□□□□ -1.73
PTPN4P29074 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.25□□□□□ -1.73
PTPN4P29074 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.25□□□□□ -1.73
PTPN4P29074 AC093014.1-201ENST00000548926 724 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 MTND4LP24-201ENST00000572277 291 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.25□□□□□ -1.73
PTPN4P29074 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.25□□□□□ -1.73
PTPN4P29074 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PTPN4P29074 PCNAP1-202ENST00000595299 752 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 AP001160.4-201ENST00000596971 382 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PTPN4P29074 IPO5P1-202ENST00000600039 287 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 AL671309.1-201ENST00000603750 544 ntBASIC4.25□□□□□ -1.73
PTPN4P29074 AC018618.2-201ENST00000604770 446 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms