Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.29□□□□□ -1.72
COL4A1P02462 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A1P02462 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
COL4A1P02462 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A1P02462 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A1P02462 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.29□□□□□ -1.72
COL4A1P02462 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
COL4A1P02462 AL034403.1-201ENST00000399414 885 ntBASIC4.29□□□□□ -1.72
COL4A1P02462 RPS29P2-201ENST00000479278 136 ntBASIC4.29□□□□□ -1.72
COL4A1P02462 RN7SL504P-201ENST00000494496 287 ntBASIC4.29□□□□□ -1.72
COL4A1P02462 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.29□□□□□ -1.72
COL4A1P02462 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.29□□□□□ -1.72
COL4A1P02462 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.29□□□□□ -1.72
COL4A1P02462 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.29□□□□□ -1.72
COL4A1P02462 AL606834.2-201ENST00000602954 668 ntBASIC4.29□□□□□ -1.72
COL4A1P02462 OR51C1P-201ENST00000608504 942 ntBASIC4.29□□□□□ -1.72
COL4A1P02462 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A1P02462 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A1P02462 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A1P02462 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A1P02462 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.28□□□□□ -1.72
COL4A1P02462 OTUD4P1-201ENST00000237841 3067 ntBASIC4.28□□□□□ -1.72
COL4A1P02462 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
COL4A1P02462 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A1P02462 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL4A1P02462 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
COL4A1P02462 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.28□□□□□ -1.72
COL4A1P02462 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC4.28□□□□□ -1.72
COL4A1P02462 RPS15AP29-201ENST00000445539 400 ntBASIC4.28□□□□□ -1.72
COL4A1P02462 YWHAQP9-201ENST00000445891 512 ntBASIC4.28□□□□□ -1.72
COL4A1P02462 AL671855.1-201ENST00000446875 1203 ntBASIC4.28□□□□□ -1.72
COL4A1P02462 RSL24D1P3-201ENST00000449255 495 ntBASIC4.28□□□□□ -1.72
COL4A1P02462 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.28□□□□□ -1.72
COL4A1P02462 AL133457.1-201ENST00000564251 987 ntBASIC4.28□□□□□ -1.72
COL4A1P02462 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.28□□□□□ -1.72
COL4A1P02462 AL163642.2-201ENST00000604722 1019 ntBASIC4.28□□□□□ -1.72
COL4A1P02462 AC105227.2-201ENST00000615075 605 ntBASIC4.28□□□□□ -1.72
COL4A1P02462 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.28□□□□□ -1.72
COL4A1P02462 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.28□□□□□ -1.72
COL4A1P02462 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.73
COL4A1P02462 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A1P02462 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC4.27□□□□□ -1.73
COL4A1P02462 AC092809.1-201ENST00000441469 474 ntBASIC4.27□□□□□ -1.73
COL4A1P02462 RPL7P38-201ENST00000488396 739 ntBASIC4.27□□□□□ -1.73
COL4A1P02462 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.27□□□□□ -1.73
COL4A1P02462 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.27□□□□□ -1.73
COL4A1P02462 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.27□□□□□ -1.73
COL4A1P02462 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A1P02462 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.27□□□□□ -1.73
COL4A1P02462 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.27□□□□□ -1.73
COL4A1P02462 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.27□□□□□ -1.73
COL4A1P02462 RN7SKP83-201ENST00000516512 178 ntBASIC4.27□□□□□ -1.73
COL4A1P02462 RNU6-579P-201ENST00000516879 102 ntBASIC4.27□□□□□ -1.73
COL4A1P02462 RN7SKP209-201ENST00000516888 304 ntBASIC4.27□□□□□ -1.73
COL4A1P02462 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.27□□□□□ -1.73
COL4A1P02462 HIGD1AP18-201ENST00000520730 278 ntBASIC4.27□□□□□ -1.73
COL4A1P02462 OR5AP1P-201ENST00000529730 940 ntBASIC4.27□□□□□ -1.73
COL4A1P02462 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.27□□□□□ -1.73
COL4A1P02462 MIR4276-201ENST00000584832 70 ntBASIC4.27□□□□□ -1.73
COL4A1P02462 PCA3_2.1-201ENST00000612507 409 ntBASIC4.27□□□□□ -1.73
COL4A1P02462 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
COL4A1P02462 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL4A1P02462 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A1P02462 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A1P02462 DDX6P1-205ENST00000441966 1436 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A1P02462 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.26□□□□□ -1.73
COL4A1P02462 AC074367.1-201ENST00000438685 1125 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 SETP4-201ENST00000455717 868 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 AC099563.1-201ENST00000456086 418 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 RPL5P30-201ENST00000465511 891 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A1P02462 AC017015.1-201ENST00000477387 286 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.26□□□□□ -1.73
COL4A1P02462 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A1P02462 UBE2NP1-201ENST00000545592 458 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.26□□□□□ -1.73
COL4A1P02462 AC115621.1-201ENST00000604653 858 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 AC138932.5-201ENST00000617759 563 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A1P02462 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC4.26□□□□□ -1.73
COL4A1P02462 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A1P02462 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.26□□□□□ -1.73
COL4A1P02462 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A1P02462 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A1P02462 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A1P02462 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
COL4A1P02462 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A1P02462 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
COL4A1P02462 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
COL4A1P02462 RNA5SP39-201ENST00000411245 120 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A1P02462 RPF2P1-201ENST00000424137 906 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 FTH1P25-201ENST00000447665 469 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 RPL5P24-201ENST00000463742 885 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 HMGB1P21-201ENST00000502313 581 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 NCAPGP2-201ENST00000557911 754 ntBASIC4.26□□□□□ -1.73
COL4A1P02462 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL4A1P02462 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL4A1P02462 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms