Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 AC105402.2-201ENST00000438503 358 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.03□□□□□ -1.6
PHGDHO43175 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.03□□□□□ -1.6
PHGDHO43175 GEMIN8P3-201ENST00000445417 720 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC5.03□□□□□ -1.6
PHGDHO43175 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.03□□□□□ -1.6
PHGDHO43175 BTF3P6-201ENST00000448054 499 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PHGDHO43175 RPL18AP17-201ENST00000455326 198 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC5.03□□□□□ -1.6
PHGDHO43175 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC5.03□□□□□ -1.6
PHGDHO43175 RPL31P3-201ENST00000458430 332 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.03□□□□□ -1.6
PHGDHO43175 AC010683.1-201ENST00000473673 378 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 RPS4XP1-201ENST00000482189 787 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 AC092045.1-201ENST00000495716 1231 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 AC005178.1-201ENST00000508392 440 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5.03□□□□□ -1.6
PHGDHO43175 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC5.03□□□□□ -1.6
PHGDHO43175 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC5.03□□□□□ -1.6
PHGDHO43175 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.03□□□□□ -1.6
PHGDHO43175 IGKV3D-34-201ENST00000522638 302 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 AP000790.1-201ENST00000528891 737 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC5.03□□□□□ -1.6
PHGDHO43175 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC5.03□□□□□ -1.6
PHGDHO43175 LYZ-203ENST00000549690 669 ntTSL 2 BASIC5.03□□□□□ -1.6
PHGDHO43175 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC5.03□□□□□ -1.6
PHGDHO43175 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.03□□□□□ -1.6
PHGDHO43175 NDUFB4P11-201ENST00000560510 395 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 AC012146.2-201ENST00000576545 416 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 MIR3915-201ENST00000578518 97 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 AP005136.1-201ENST00000579765 429 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 SNORD39.3-201ENST00000584451 71 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC5.03□□□□□ -1.6
PHGDHO43175 AC011445.2-201ENST00000599274 173 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 AC079395.2-201ENST00000610982 737 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 AC090527.3-201ENST00000619041 548 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 AC015908.5-201ENST00000623289 343 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PHGDHO43175 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
PHGDHO43175 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.03□□□□□ -1.6
PHGDHO43175 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
PHGDHO43175 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.03□□□□□ -1.6
PHGDHO43175 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.03□□□□□ -1.6
PHGDHO43175 ZNF37BP-203ENST00000452306 1352 ntBASIC5.03□□□□□ -1.6
PHGDHO43175 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.61
PHGDHO43175 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
PHGDHO43175 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 AL022393.1-201ENST00000625142 1677 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.02□□□□□ -1.61
PHGDHO43175 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 RNA5SP132-201ENST00000364725 118 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 AC092642.1-201ENST00000392417 425 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 RPL23AP29-201ENST00000397284 453 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 NUDT19P3-201ENST00000404698 555 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 PIGPP2-201ENST00000411569 458 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 RPS15AP38-201ENST00000413110 372 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.02□□□□□ -1.61
PHGDHO43175 AC016907.1-201ENST00000419483 435 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 AC019178.2-201ENST00000423595 505 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 AL035407.1-201ENST00000429211 571 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.02□□□□□ -1.61
PHGDHO43175 AL590103.1-201ENST00000434488 307 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.02□□□□□ -1.61
PHGDHO43175 MTND2P20-201ENST00000440805 661 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 AC004980.3-201ENST00000447046 365 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 MTCO1P48-201ENST00000448024 1096 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 AC009127.1-201ENST00000467090 155 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 AC010301.1-201ENST00000473936 355 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 AC072039.1-201ENST00000477611 581 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 PGAM1P13-201ENST00000507497 754 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC5.02□□□□□ -1.61
PHGDHO43175 NPM1P6-201ENST00000521088 871 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC5.02□□□□□ -1.61
PHGDHO43175 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC5.02□□□□□ -1.61
PHGDHO43175 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.02□□□□□ -1.61
PHGDHO43175 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC5.02□□□□□ -1.61
PHGDHO43175 AL390726.5-202ENST00000564800 256 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.02□□□□□ -1.61
PHGDHO43175 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.02□□□□□ -1.61
PHGDHO43175 AL359535.1-201ENST00000612100 1087 ntBASIC5.02□□□□□ -1.61
PHGDHO43175 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.02□□□□□ -1.61
PHGDHO43175 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.02□□□□□ -1.61
PHGDHO43175 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
PHGDHO43175 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.02□□□□□ -1.61
PHGDHO43175 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
PHGDHO43175 FER-202ENST00000438717 1531 ntTSL 2 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms