Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP88Q99567 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP88Q99567 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.6□□□□□ -1.51
NUP88Q99567 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.6□□□□□ -1.51
NUP88Q99567 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP88Q99567 AC009643.2-201ENST00000603543 1448 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
NUP88Q99567 Y_RNA.169-201ENST00000363745 96 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 RNU6-560P-201ENST00000364007 108 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
NUP88Q99567 RNU1-82P-201ENST00000390851 165 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 RNU2-65P-201ENST00000410162 185 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 RPL7P53-201ENST00000421245 739 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 AL359265.2-201ENST00000434367 631 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NUP88Q99567 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC5.6□□□□□ -1.51
NUP88Q99567 MTND2P22-201ENST00000444325 1033 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC5.6□□□□□ -1.51
NUP88Q99567 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.6□□□□□ -1.51
NUP88Q99567 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5.6□□□□□ -1.51
NUP88Q99567 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC5.6□□□□□ -1.51
NUP88Q99567 RPS5P7-201ENST00000456664 608 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC5.6□□□□□ -1.51
NUP88Q99567 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.6□□□□□ -1.51
NUP88Q99567 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NUP88Q99567 AC010486.2-201ENST00000505572 483 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 AC008885.2-201ENST00000509506 930 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 AC116353.3-201ENST00000511215 249 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 AC008837.2-201ENST00000513076 418 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 AC008494.2-201ENST00000514544 370 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC5.6□□□□□ -1.51
NUP88Q99567 AP001207.1-201ENST00000524051 481 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 AP003461.1-201ENST00000528866 78 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.6□□□□□ -1.51
NUP88Q99567 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.6□□□□□ -1.51
NUP88Q99567 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.6□□□□□ -1.51
NUP88Q99567 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NUP88Q99567 AGGF1P6-201ENST00000569213 976 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 RN7SL802P-201ENST00000577858 299 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.6□□□□□ -1.51
NUP88Q99567 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.6□□□□□ -1.51
NUP88Q99567 BNIP3P26-201ENST00000600827 554 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC5.6□□□□□ -1.51
NUP88Q99567 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.6□□□□□ -1.51
NUP88Q99567 AC015804.1-201ENST00000622935 435 ntBASIC5.6□□□□□ -1.51
NUP88Q99567 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC5.6□□□□□ -1.51
NUP88Q99567 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP88Q99567 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP88Q99567 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP88Q99567 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NUP88Q99567 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP88Q99567 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.6□□□□□ -1.51
NUP88Q99567 AL034370.1-201ENST00000397254 1590 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
NUP88Q99567 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
NUP88Q99567 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
NUP88Q99567 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.59□□□□□ -1.51
NUP88Q99567 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
NUP88Q99567 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.59□□□□□ -1.51
NUP88Q99567 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.59□□□□□ -1.51
NUP88Q99567 AL512646.1-201ENST00000269395 1077 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
NUP88Q99567 RNU6-839P-201ENST00000363347 108 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
NUP88Q99567 AL161909.1-201ENST00000397390 712 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC5.59□□□□□ -1.51
NUP88Q99567 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.59□□□□□ -1.51
NUP88Q99567 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC5.59□□□□□ -1.51
NUP88Q99567 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC5.59□□□□□ -1.51
NUP88Q99567 OR2AH1P-201ENST00000425717 928 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 USP9YP11-201ENST00000427537 717 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.59□□□□□ -1.51
NUP88Q99567 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC5.59□□□□□ -1.51
NUP88Q99567 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC5.59□□□□□ -1.51
NUP88Q99567 BTF3P6-201ENST00000448054 499 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 RPL23AP15-201ENST00000450202 459 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.59□□□□□ -1.51
NUP88Q99567 AL133477.1-201ENST00000457472 514 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 PNPLA4P1-201ENST00000458328 305 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.59□□□□□ -1.51
NUP88Q99567 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
NUP88Q99567 HMGB3P16-201ENST00000508037 287 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5.59□□□□□ -1.51
NUP88Q99567 IGKV1-32-201ENST00000519290 311 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 HIGD1AP6-201ENST00000521833 279 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 AF279873.1-201ENST00000523393 313 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
NUP88Q99567 MTND2P26-201ENST00000528255 1029 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC5.59□□□□□ -1.51
NUP88Q99567 PDCL2P2-201ENST00000533651 189 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 AP000619.3-201ENST00000535634 1127 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 AC007834.2-201ENST00000536310 343 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 AC004217.3-201ENST00000551552 878 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 DUXAP6-201ENST00000553858 601 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.59□□□□□ -1.51
NUP88Q99567 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.59□□□□□ -1.51
NUP88Q99567 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.59□□□□□ -1.51
NUP88Q99567 AC073091.2-201ENST00000603205 907 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 AL121932.1-201ENST00000605542 214 ntBASIC5.59□□□□□ -1.51
NUP88Q99567 AC015914.2-201ENST00000618167 288 ntBASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms