Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 STAG3L4-201ENST00000352103 530 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 Y_RNA.157-201ENST00000363638 102 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 SNORD81.2-201ENST00000365153 76 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 SNORA32.2-201ENST00000384049 122 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AL162578.1-201ENST00000406202 378 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AL033519.1-201ENST00000407266 307 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 RN7SKP221-201ENST00000410420 301 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 RNU2-47P-201ENST00000410649 186 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 EEF1A1P40-201ENST00000412883 573 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 PSMA2P3-201ENST00000429685 675 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 RPL36AP53-201ENST00000432891 316 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 RPL21P89-201ENST00000444021 467 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC006480.1-201ENST00000449887 378 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AL034369.1-201ENST00000453808 477 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 RPL37P6-202ENST00000464216 403 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AL163973.1-201ENST00000484753 577 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 EIF4EP3-201ENST00000498782 656 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC114324.2-202ENST00000503812 134 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC017037.2-201ENST00000513850 890 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 RNU6-1153P-201ENST00000516760 105 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 RN7SKP82-201ENST00000516786 223 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 RNA5SP400-201ENST00000517155 111 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 PSMA2P1-201ENST00000526365 646 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC022690.1-201ENST00000526681 550 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC011979.2-201ENST00000527568 352 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 PTP4A1P6-201ENST00000531034 478 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC128657.1-201ENST00000549459 145 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC007424.1-203ENST00000554613 687 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC007956.1-201ENST00000555623 542 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AP001429.1-201ENST00000602568 530 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AP001823.1-201ENST00000604056 1003 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC013553.2-201ENST00000604244 589 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AL683813.2-201ENST00000605245 502 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AL390877.1-201ENST00000605704 214 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AL121992.2-201ENST00000606262 256 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AL031666.3-201ENST00000609320 1006 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC009233.1-201ENST00000616477 371 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC002550.2-201ENST00000621246 394 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AL138693.1-201ENST00000622219 129 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC068213.1-201ENST00000625124 226 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AL132640.3-201ENST00000630473 177 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 AC022325.1-201ENST00000502748 2199 ntBASIC5.01□□□□□ -1.61
CCDC140Q96MF4 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC140Q96MF4 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC5□□□□□ -1.61
CCDC140Q96MF4 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC5□□□□□ -1.61
CCDC140Q96MF4 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC5□□□□□ -1.61
CCDC140Q96MF4 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 AL359893.1-201ENST00000447628 1580 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
CCDC140Q96MF4 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 AL033543.1-201ENST00000623440 13454 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5□□□□□ -1.61
CCDC140Q96MF4 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 Y_RNA.255-201ENST00000364581 97 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 RNU6-996P-201ENST00000365438 107 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
CCDC140Q96MF4 SNORD37.1-201ENST00000390968 65 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 U3.43-201ENST00000410734 213 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 MTCYBP8-201ENST00000422855 651 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 RPL35AP12-201ENST00000425362 338 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC5□□□□□ -1.61
CCDC140Q96MF4 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC5□□□□□ -1.61
CCDC140Q96MF4 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5□□□□□ -1.61
CCDC140Q96MF4 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms