Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC42Q96M95 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC42Q96M95 RPS29P31-201ENST00000446147 164 ntBASIC4.02□□□□□ -1.77
CCDC42Q96M95 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC42Q96M95 AL354710.1-201ENST00000453641 246 ntBASIC4.02□□□□□ -1.77
CCDC42Q96M95 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC42Q96M95 AP002371.1-201ENST00000463604 433 ntBASIC4.02□□□□□ -1.77
CCDC42Q96M95 NPM1P17-201ENST00000479221 602 ntBASIC4.02□□□□□ -1.77
CCDC42Q96M95 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC42Q96M95 RPL23AP73-201ENST00000492507 471 ntBASIC4.02□□□□□ -1.77
CCDC42Q96M95 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC42Q96M95 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC42Q96M95 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC42Q96M95 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC42Q96M95 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC42Q96M95 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC42Q96M95 CYP2C60P-201ENST00000566088 139 ntBASIC4.02□□□□□ -1.77
CCDC42Q96M95 AP005901.4-201ENST00000577336 569 ntBASIC4.02□□□□□ -1.77
CCDC42Q96M95 MIR4738-201ENST00000579134 87 ntBASIC4.02□□□□□ -1.77
CCDC42Q96M95 AC023575.1-201ENST00000580510 358 ntBASIC4.02□□□□□ -1.77
CCDC42Q96M95 MIR3939-201ENST00000582614 106 ntBASIC4.02□□□□□ -1.77
CCDC42Q96M95 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC42Q96M95 AC015726.1-201ENST00000602353 681 ntBASIC4.02□□□□□ -1.77
CCDC42Q96M95 AC010200.2-201ENST00000605098 235 ntBASIC4.02□□□□□ -1.77
CCDC42Q96M95 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC42Q96M95 U7.8-201ENST00000619968 63 ntBASIC4.02□□□□□ -1.77
CCDC42Q96M95 AC112484.5-201ENST00000624189 228 ntBASIC4.02□□□□□ -1.77
CCDC42Q96M95 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC42Q96M95 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC42Q96M95 AC114546.3-201ENST00000623582 1734 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC42Q96M95 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC42Q96M95 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC42Q96M95 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC42Q96M95 ST13P16-201ENST00000401760 781 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 SNORA57.3-201ENST00000411095 141 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 RAB9AP4-201ENST00000415230 609 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 HMGB3P20-201ENST00000417997 600 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 CEACAMP9-201ENST00000442990 513 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 CYCSP53-201ENST00000455540 265 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 AC099563.1-201ENST00000456086 418 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 RPL7L1P8-201ENST00000469911 741 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 AC034205.1-201ENST00000520621 638 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 AC109635.6-201ENST00000525487 1113 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 OR5AP1P-201ENST00000529730 940 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 AC234775.3-201ENST00000564612 656 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 MIR4284-201ENST00000578924 81 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 KPNA2P3-201ENST00000584190 848 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 MIR6867-201ENST00000610636 67 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 AC016957.2-201ENST00000616998 848 ntBASIC4.01□□□□□ -1.77
CCDC42Q96M95 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.01□□□□□ -1.77
CCDC42Q96M95 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC42Q96M95 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC42Q96M95 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC42Q96M95 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
CCDC42Q96M95 OR10AB1P-202ENST00000641219 1686 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
CCDC42Q96M95 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC42Q96M95 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC42Q96M95 RNU1-32P-201ENST00000363937 159 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 RNU4-7P-201ENST00000364758 141 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 RNU6-146P-201ENST00000384602 108 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 RPL21P65-201ENST00000406094 466 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 RN7SKP177-201ENST00000410567 355 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 AC006989.1-201ENST00000427212 131 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 HMGB3P5-201ENST00000428894 612 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4□□□□□ -1.77
CCDC42Q96M95 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4□□□□□ -1.77
CCDC42Q96M95 RPS3AP50-201ENST00000487064 803 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4□□□□□ -1.77
CCDC42Q96M95 NDUFB4P9-201ENST00000511646 388 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4□□□□□ -1.77
CCDC42Q96M95 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4□□□□□ -1.77
CCDC42Q96M95 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4□□□□□ -1.77
CCDC42Q96M95 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4□□□□□ -1.77
CCDC42Q96M95 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4□□□□□ -1.77
CCDC42Q96M95 AC025884.1-201ENST00000556034 378 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 AC120057.2-201ENST00000571520 271 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4□□□□□ -1.77
CCDC42Q96M95 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4□□□□□ -1.77
CCDC42Q96M95 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4□□□□□ -1.77
CCDC42Q96M95 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 MIR6500-201ENST00000622700 86 ntBASIC4□□□□□ -1.77
CCDC42Q96M95 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC42Q96M95 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms