Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MIR192-201ENST00000384915 110 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 MTND4LP14-201ENST00000429447 288 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 MTND4LP7-201ENST00000431728 294 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 RPL37P1-201ENST00000432310 284 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 RPL23AP52-201ENST00000439311 478 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 RPL23AP89-201ENST00000439324 255 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 HMGB1P48-201ENST00000446155 598 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 RPL23AP81-201ENST00000455252 467 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC007686.1-201ENST00000488511 463 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 RPL23AP72-201ENST00000492447 435 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC025445.1-201ENST00000502728 300 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC008494.2-201ENST00000514544 370 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 RFPL1S-203ENST00000539579 330 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 SNRPGP1-201ENST00000553864 222 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC008638.3-201ENST00000603341 463 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC064801.1-201ENST00000612025 407 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC104307.1-201ENST00000616142 196 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 RMST_9.1-201ENST00000619945 193 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC140479.6-201ENST00000633535 357 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 AC008013.2-202ENST00000637965 364 ntBASIC4.25□□□□□ -1.73
VPS39Q96JC1 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS39Q96JC1 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS39Q96JC1 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS39Q96JC1 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS39Q96JC1 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS39Q96JC1 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS39Q96JC1 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS39Q96JC1 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS39Q96JC1 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS39Q96JC1 MIR129-1-201ENST00000384972 72 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 RPL23AP59-201ENST00000399415 461 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 TAF9BP2-201ENST00000400856 499 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 AGR3-202ENST00000402239 563 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 RPS4XP9-201ENST00000405151 780 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 AL691517.1-201ENST00000440833 1235 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 MTCO3P43-201ENST00000440974 771 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 AL500527.1-201ENST00000448532 255 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 TVP23BP2-201ENST00000455082 615 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC006517.1-201ENST00000480485 328 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 RPS23P1-201ENST00000491662 432 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC078817.1-201ENST00000492623 435 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 RPL5P23-201ENST00000496040 868 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 BNIP3P41-201ENST00000503774 571 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC025554.1-201ENST00000505641 188 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 RNU4-60P-201ENST00000517239 135 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 OR8L1P-201ENST00000534005 955 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 TOMM20P2-201ENST00000540082 421 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC137768.1-201ENST00000549998 553 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC006270.2-201ENST00000578523 652 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC025016.1-201ENST00000616746 682 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 AC022079.2-201ENST00000619739 566 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 MIR4496-201ENST00000635896 61 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 FAM157B-203ENST00000639350 358 ntBASIC4.24□□□□□ -1.73
VPS39Q96JC1 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS39Q96JC1 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS39Q96JC1 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS39Q96JC1 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS39Q96JC1 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.23□□□□□ -1.73
VPS39Q96JC1 AC097504.1-201ENST00000515103 2415 ntBASIC4.23□□□□□ -1.73
VPS39Q96JC1 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS39Q96JC1 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms