Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MRPL35P4-201ENST00000453682 566 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC005412.2-201ENST00000492004 341 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC020699.1-201ENST00000505161 445 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC008494.2-201ENST00000514544 370 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 SNORA31.9-201ENST00000516429 84 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 RN7SKP265-201ENST00000516448 223 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 MIR4444-1-201ENST00000581696 74 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 MIR4444-2-201ENST00000584390 74 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 MIR3138-201ENST00000585238 82 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AP001542.2-201ENST00000593141 364 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC233280.2-201ENST00000603917 1070 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AL450336.1-201ENST00000605180 586 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC090948.2-201ENST00000607363 564 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AL353600.1-201ENST00000608148 251 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AL353726.1-201ENST00000614041 1000 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC123768.4-201ENST00000616244 701 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AC243756.2-201ENST00000618406 463 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 AL109659.3-201ENST00000624985 950 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 GMFB-210ENST00000628554 639 ntTSL 4 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 Z95327.2-201ENST00000414579 1873 ntBASIC4.64□□□□□ -1.67
COL28A1Q2UY09 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL28A1Q2UY09 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AL353743.4-201ENST00000422653 1547 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 RNU6-906P-201ENST00000384700 70 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 MIR16-1-201ENST00000385271 89 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 NCSTNP1-201ENST00000406229 144 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 RNU6-603P-201ENST00000411403 107 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 RSU1P3-201ENST00000412878 835 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 GTF2IP5-201ENST00000414608 731 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 RAD23BP1-201ENST00000421404 1227 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC009965.2-201ENST00000425328 970 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 C1DP1-201ENST00000426049 402 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 UBE2V1P5-201ENST00000440070 405 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 VN1R25P-201ENST00000443385 738 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC004980.3-201ENST00000447046 365 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC114755.5-201ENST00000447760 831 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 TCEA1P1-201ENST00000449716 880 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AL591363.1-201ENST00000450091 483 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 RPS6P2-201ENST00000454208 705 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 OFD1P7Y-201ENST00000454643 1155 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC092155.2-201ENST00000454675 477 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC112206.1-201ENST00000468416 477 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC069528.1-202ENST00000482888 637 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC118282.2-201ENST00000508739 374 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC022882.1-201ENST00000532142 501 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC124856.1-201ENST00000600819 896 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AC008782.1-201ENST00000603386 430 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AL137072.1-201ENST00000603444 466 ntBASIC4.63□□□□□ -1.67
COL28A1Q2UY09 AL445435.1-201ENST00000604232 665 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms