Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXC9P31274 BTF3P9-201ENST00000418784 283 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 MTCO1P54-201ENST00000430139 712 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 HSFY7P-201ENST00000432672 318 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 HSFY8P-201ENST00000437934 318 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXC9P31274 PRSS3P4-201ENST00000453323 162 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 HSFY5P-201ENST00000453726 309 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXC9P31274 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXC9P31274 UBE2CP3-201ENST00000502715 450 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 AC006499.5-201ENST00000505037 514 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXC9P31274 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXC9P31274 DUX4L52-201ENST00000549363 777 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXC9P31274 BNIP3P27-201ENST00000599991 412 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 MTATP6P2-201ENST00000603319 678 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXC9P31274 BNIP3P31-201ENST00000604515 566 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 AC067931.1-201ENST00000624190 671 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXC9P31274 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXC9P31274 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXC9P31274 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXC9P31274 AC083837.1-201ENST00000565297 2994 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXC9P31274 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXC9P31274 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXC9P31274 Y_RNA.333-201ENST00000365274 102 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.22□□□□□ -1.57
HOXC9P31274 SNORA79B-201ENST00000410557 148 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 AC092647.1-201ENST00000420654 287 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 MTND2P9-201ENST00000422293 931 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 AL591419.1-201ENST00000427423 339 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 MTCYBP29-201ENST00000436327 1006 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 CYCSP43-201ENST00000438233 310 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 GXYLT1P1-201ENST00000446657 490 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC5.22□□□□□ -1.57
HOXC9P31274 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
HOXC9P31274 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXC9P31274 AC006517.1-201ENST00000480485 328 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 RN7SL271P-201ENST00000487601 295 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 CAB39P1-201ENST00000502277 460 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 AC026726.1-201ENST00000512859 601 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 AP003102.1-201ENST00000525638 661 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXC9P31274 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXC9P31274 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC5.22□□□□□ -1.57
HOXC9P31274 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC5.22□□□□□ -1.57
HOXC9P31274 NPM1P47-201ENST00000560843 856 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 RN7SL339P-201ENST00000580597 296 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC5.22□□□□□ -1.57
HOXC9P31274 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXC9P31274 AC012468.1-201ENST00000604888 430 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 AC026979.4-201ENST00000606555 645 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 AP000240.1-201ENST00000609910 452 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 AL158062.1-201ENST00000619632 745 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 AC095038.2-201ENST00000621464 1070 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 AC124312.6-202ENST00000623624 418 ntBASIC5.22□□□□□ -1.57
HOXC9P31274 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXC9P31274 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXC9P31274 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXC9P31274 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXC9P31274 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXC9P31274 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXC9P31274 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.22□□□□□ -1.57
HOXC9P31274 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
HOXC9P31274 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXC9P31274 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.21□□□□□ -1.57
HOXC9P31274 AP001642.1-201ENST00000624727 2117 ntBASIC5.21□□□□□ -1.57
HOXC9P31274 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
HOXC9P31274 TCP1P3-201ENST00000414406 1498 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 ST7-221ENST00000465133 2155 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXC9P31274 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXC9P31274 RNU6-31P-201ENST00000384388 108 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 MIR7-3-201ENST00000384898 110 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 AL034403.1-201ENST00000399414 885 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 AC233289.1-201ENST00000403700 508 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 AC068533.1-201ENST00000418542 415 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 MTND2P15-201ENST00000418575 892 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 CYP4F29P-201ENST00000420685 446 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 AL354692.1-201ENST00000423044 315 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXC9P31274 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXC9P31274 GEMIN8P3-201ENST00000445417 720 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXC9P31274 CDH12P2-201ENST00000504393 298 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 BTG4P1-201ENST00000510421 183 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC5.21□□□□□ -1.58
HOXC9P31274 RNU6-334P-201ENST00000517072 102 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXC9P31274 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXC9P31274 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXC9P31274 UBTFL9-201ENST00000534504 1148 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 AP000619.3-201ENST00000535634 1127 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXC9P31274 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXC9P31274 AL358913.1-201ENST00000554342 121 ntBASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms