Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC107304.1-201ENST00000604229 296 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AC091946.2-201ENST00000606105 291 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AC106028.5-201ENST00000610332 395 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AC010678.1-201ENST00000614118 713 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AC127502.3-201ENST00000636170 1206 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 ATP8A2P3-201ENST00000426792 1536 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AC007938.2-201ENST00000604666 2634 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AL450326.2-201ENST00000421913 1962 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 MTND5P24-201ENST00000438892 1767 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
HOXD3P31249 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
HOXD3P31249 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
HOXD3P31249 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 AC009962.1-201ENST00000567327 3813 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AC005332.5-201ENST00000591222 2919 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXD3P31249 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXD3P31249 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXD3P31249 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HOXD3P31249 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXD3P31249 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXD3P31249 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXD3P31249 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.13□□□□□ -1.75
HOXD3P31249 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXD3P31249 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXD3P31249 AC092079.1-201ENST00000558620 1985 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXD3P31249 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXD3P31249 AL512646.1-201ENST00000269395 1077 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 SUGT1P1-201ENST00000379514 476 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HOXD3P31249 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HOXD3P31249 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HOXD3P31249 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXD3P31249 AC136624.1-201ENST00000400791 413 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 USP9YP33-201ENST00000412220 421 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXD3P31249 AC234782.4-201ENST00000417646 1048 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 AL590609.2-201ENST00000421430 368 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXD3P31249 AC138761.5-201ENST00000433967 325 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 PPIAP13-201ENST00000434706 478 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 USP9YP35-201ENST00000435696 412 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXD3P31249 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXD3P31249 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXD3P31249 AC073850.1-201ENST00000449243 255 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXD3P31249 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXD3P31249 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXD3P31249 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXD3P31249 USP9YP10-201ENST00000454868 628 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 snoU13.20-201ENST00000459180 104 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 RPL30P9-201ENST00000465586 330 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 UBA52P3-201ENST00000491303 382 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXD3P31249 AC005912.1-201ENST00000495392 255 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 HMGB1P28-201ENST00000507778 552 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXD3P31249 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXD3P31249 USP9YP5-201ENST00000511770 630 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 AC110775.1-201ENST00000513721 462 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXD3P31249 SNORA48.10-201ENST00000516965 160 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 RNU6-1261P-201ENST00000517194 104 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 AP001207.1-201ENST00000524051 481 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXD3P31249 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HOXD3P31249 AP000873.5-201ENST00000533906 236 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXD3P31249 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXD3P31249 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HOXD3P31249 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXD3P31249 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXD3P31249 AC010546.1-201ENST00000569391 485 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
HOXD3P31249 RN7SL356P-201ENST00000582228 248 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 AC008507.1-201ENST00000587506 734 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HOXD3P31249 AC006116.3-201ENST00000592968 361 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 AC091488.1-201ENST00000604239 660 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 AL049539.1-201ENST00000611964 459 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 AC109583.2-201ENST00000617367 129 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXD3P31249 AC015804.1-201ENST00000622935 435 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXD3P31249 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
HOXD3P31249 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
HOXD3P31249 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXD3P31249 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXD3P31249 MTND5P29-201ENST00000458676 1807 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXD3P31249 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
HOXD3P31249 AC009313.2-201ENST00000417893 1941 ntBASIC4.13□□□□□ -1.75
HOXD3P31249 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXD3P31249 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXD3P31249 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC4.13□□□□□ -1.75
HOXD3P31249 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 127.6 ms