Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
COL5A3P25940 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A3P25940 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
COL5A3P25940 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL5A3P25940 FRG1CP-201ENST00000358464 769 ntBASIC4.5□□□□□ -1.69
COL5A3P25940 RNU1-108P-201ENST00000362556 161 ntBASIC4.5□□□□□ -1.69
COL5A3P25940 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.5□□□□□ -1.69
COL5A3P25940 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.5□□□□□ -1.69
COL5A3P25940 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.5□□□□□ -1.69
COL5A3P25940 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.5□□□□□ -1.69
COL5A3P25940 AC022146.1-201ENST00000595307 847 ntBASIC4.5□□□□□ -1.69
COL5A3P25940 AL033523.1-201ENST00000605153 153 ntBASIC4.5□□□□□ -1.69
COL5A3P25940 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
COL5A3P25940 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL5A3P25940 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL5A3P25940 AC010300.1-201ENST00000600671 5134 ntBASIC4.5□□□□□ -1.69
COL5A3P25940 TCP1P3-201ENST00000414406 1498 ntBASIC4.5□□□□□ -1.69
COL5A3P25940 MTCO1P46-201ENST00000451639 1491 ntBASIC4.5□□□□□ -1.69
COL5A3P25940 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL5A3P25940 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL5A3P25940 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL5A3P25940 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.5□□□□□ -1.69
COL5A3P25940 AL353743.1-202ENST00000431724 1695 ntBASIC4.5□□□□□ -1.69
COL5A3P25940 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL5A3P25940 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.49□□□□□ -1.69
COL5A3P25940 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL5A3P25940 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL5A3P25940 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
COL5A3P25940 MIR1289-1-201ENST00000408836 144 ntBASIC4.49□□□□□ -1.69
COL5A3P25940 LIPT1P1-201ENST00000415870 1186 ntBASIC4.49□□□□□ -1.69
COL5A3P25940 OR4K6P-201ENST00000416478 897 ntBASIC4.49□□□□□ -1.69
COL5A3P25940 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.49□□□□□ -1.69
COL5A3P25940 ASNSP4-201ENST00000511103 447 ntBASIC4.49□□□□□ -1.69
COL5A3P25940 PTGES3P3-201ENST00000511479 482 ntBASIC4.49□□□□□ -1.69
COL5A3P25940 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.49□□□□□ -1.69
COL5A3P25940 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.49□□□□□ -1.69
COL5A3P25940 OR51C1P-201ENST00000608504 942 ntBASIC4.49□□□□□ -1.69
COL5A3P25940 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
COL5A3P25940 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL5A3P25940 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL5A3P25940 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.49□□□□□ -1.69
COL5A3P25940 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
COL5A3P25940 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL5A3P25940 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL5A3P25940 AC011266.1-201ENST00000624119 3569 ntBASIC4.49□□□□□ -1.69
COL5A3P25940 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL5A3P25940 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
COL5A3P25940 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL5A3P25940 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
COL5A3P25940 HLFP1-201ENST00000402375 499 ntBASIC4.49□□□□□ -1.69
COL5A3P25940 AL031121.1-201ENST00000406553 254 ntBASIC4.49□□□□□ -1.69
COL5A3P25940 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.49□□□□□ -1.69
COL5A3P25940 NDUFB1P1-201ENST00000435191 180 ntBASIC4.49□□□□□ -1.69
COL5A3P25940 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.49□□□□□ -1.69
COL5A3P25940 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.49□□□□□ -1.69
COL5A3P25940 RPS4XP2-201ENST00000458402 793 ntBASIC4.49□□□□□ -1.69
COL5A3P25940 RPL32P34-201ENST00000486380 400 ntBASIC4.49□□□□□ -1.69
COL5A3P25940 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC4.49□□□□□ -1.69
COL5A3P25940 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL5A3P25940 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.49□□□□□ -1.69
COL5A3P25940 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.49□□□□□ -1.69
COL5A3P25940 AL606834.2-201ENST00000602954 668 ntBASIC4.49□□□□□ -1.69
COL5A3P25940 AP003355.3-201ENST00000623465 114 ntBASIC4.49□□□□□ -1.69
COL5A3P25940 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC4.49□□□□□ -1.69
COL5A3P25940 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL5A3P25940 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL5A3P25940 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL5A3P25940 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL5A3P25940 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.48□□□□□ -1.69
COL5A3P25940 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL5A3P25940 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
COL5A3P25940 BX323014.1-201ENST00000412876 237 ntBASIC4.48□□□□□ -1.69
COL5A3P25940 OR5AW1P-201ENST00000426334 1006 ntBASIC4.48□□□□□ -1.69
COL5A3P25940 AL136126.1-201ENST00000473603 402 ntBASIC4.48□□□□□ -1.69
COL5A3P25940 AC109925.1-201ENST00000478069 331 ntBASIC4.48□□□□□ -1.69
COL5A3P25940 TRBV12-2-201ENST00000489763 344 ntBASIC4.48□□□□□ -1.69
COL5A3P25940 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.48□□□□□ -1.69
COL5A3P25940 AP006245.1-201ENST00000522549 120 ntBASIC4.48□□□□□ -1.69
COL5A3P25940 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC4.48□□□□□ -1.69
COL5A3P25940 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.48□□□□□ -1.69
COL5A3P25940 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.48□□□□□ -1.69
COL5A3P25940 MIMT1-201ENST00000597105 1050 ntBASIC4.48□□□□□ -1.69
COL5A3P25940 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.48□□□□□ -1.69
COL5A3P25940 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
COL5A3P25940 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL5A3P25940 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL5A3P25940 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.48□□□□□ -1.69
COL5A3P25940 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL5A3P25940 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
COL5A3P25940 SAGE2P-201ENST00000420011 2126 ntBASIC4.47□□□□□ -1.69
COL5A3P25940 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.47□□□□□ -1.69
COL5A3P25940 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
COL5A3P25940 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL5A3P25940 RNA5SP52-201ENST00000362448 134 ntBASIC4.47□□□□□ -1.69
COL5A3P25940 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL5A3P25940 AJ239321.1-201ENST00000424255 564 ntBASIC4.47□□□□□ -1.69
COL5A3P25940 HIGD1AP12-201ENST00000427832 281 ntBASIC4.47□□□□□ -1.69
COL5A3P25940 MTCO1P45-201ENST00000431457 267 ntBASIC4.47□□□□□ -1.69
COL5A3P25940 AC096638.2-201ENST00000434965 711 ntBASIC4.47□□□□□ -1.69
COL5A3P25940 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms