Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.39□□□□□ -1.71
MSH3P20585 CCT8P1-201ENST00000413611 1657 ntBASIC4.39□□□□□ -1.71
MSH3P20585 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.39□□□□□ -1.71
MSH3P20585 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
MSH3P20585 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
MSH3P20585 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
MSH3P20585 METTL21EP-201ENST00000298105 713 ntBASIC4.39□□□□□ -1.71
MSH3P20585 RNA5SP27-201ENST00000363839 119 ntBASIC4.39□□□□□ -1.71
MSH3P20585 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.39□□□□□ -1.71
MSH3P20585 MTATP6P20-201ENST00000414147 562 ntBASIC4.39□□□□□ -1.71
MSH3P20585 LIPT1P1-201ENST00000415870 1186 ntBASIC4.39□□□□□ -1.71
MSH3P20585 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
MSH3P20585 AC099336.2-201ENST00000422457 254 ntBASIC4.39□□□□□ -1.71
MSH3P20585 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC4.39□□□□□ -1.71
MSH3P20585 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.39□□□□□ -1.71
MSH3P20585 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.39□□□□□ -1.71
MSH3P20585 MTCO3P21-201ENST00000430791 643 ntBASIC4.39□□□□□ -1.71
MSH3P20585 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.39□□□□□ -1.71
MSH3P20585 EIF2S2P2-201ENST00000447161 982 ntBASIC4.39□□□□□ -1.71
MSH3P20585 SEPT14P24-201ENST00000447236 180 ntBASIC4.39□□□□□ -1.71
MSH3P20585 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC4.39□□□□□ -1.71
MSH3P20585 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
MSH3P20585 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
MSH3P20585 AC099560.2-201ENST00000457554 255 ntBASIC4.39□□□□□ -1.71
MSH3P20585 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.39□□□□□ -1.71
MSH3P20585 AC053481.1-201ENST00000467217 306 ntBASIC4.39□□□□□ -1.71
MSH3P20585 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.39□□□□□ -1.71
MSH3P20585 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.39□□□□□ -1.71
MSH3P20585 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.39□□□□□ -1.71
MSH3P20585 AC098862.1-201ENST00000504991 413 ntBASIC4.39□□□□□ -1.71
MSH3P20585 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC4.39□□□□□ -1.71
MSH3P20585 RN7SKP265-201ENST00000516448 223 ntBASIC4.39□□□□□ -1.71
MSH3P20585 AC008694.2-201ENST00000517591 306 ntBASIC4.39□□□□□ -1.71
MSH3P20585 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.39□□□□□ -1.71
MSH3P20585 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC4.39□□□□□ -1.71
MSH3P20585 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.39□□□□□ -1.71
MSH3P20585 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.39□□□□□ -1.71
MSH3P20585 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC4.39□□□□□ -1.71
MSH3P20585 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.39□□□□□ -1.71
MSH3P20585 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.39□□□□□ -1.71
MSH3P20585 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.39□□□□□ -1.71
MSH3P20585 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC4.39□□□□□ -1.71
MSH3P20585 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.39□□□□□ -1.71
MSH3P20585 MTCYBP23-201ENST00000558717 1102 ntBASIC4.39□□□□□ -1.71
MSH3P20585 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.39□□□□□ -1.71
MSH3P20585 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC4.39□□□□□ -1.71
MSH3P20585 Z82195.1-201ENST00000604558 398 ntBASIC4.39□□□□□ -1.71
MSH3P20585 AC010201.1-201ENST00000605051 540 ntBASIC4.39□□□□□ -1.71
MSH3P20585 RNU4-5P-201ENST00000607255 135 ntBASIC4.39□□□□□ -1.71
MSH3P20585 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.39□□□□□ -1.71
MSH3P20585 AL136295.6-201ENST00000610486 658 ntBASIC4.39□□□□□ -1.71
MSH3P20585 AC140725.3-201ENST00000616193 880 ntBASIC4.39□□□□□ -1.71
MSH3P20585 AL158196.1-201ENST00000616786 434 ntBASIC4.39□□□□□ -1.71
MSH3P20585 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC4.39□□□□□ -1.71
MSH3P20585 AC007342.8-201ENST00000623278 678 ntBASIC4.39□□□□□ -1.71
MSH3P20585 AL356863.1-201ENST00000623378 1080 ntBASIC4.39□□□□□ -1.71
MSH3P20585 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.39□□□□□ -1.71
MSH3P20585 AC092079.1-201ENST00000558620 1985 ntBASIC4.39□□□□□ -1.71
MSH3P20585 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
MSH3P20585 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
MSH3P20585 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.39□□□□□ -1.71
MSH3P20585 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.39□□□□□ -1.71
MSH3P20585 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
MSH3P20585 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
MSH3P20585 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
MSH3P20585 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
MSH3P20585 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
MSH3P20585 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
MSH3P20585 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.39□□□□□ -1.71
MSH3P20585 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
MSH3P20585 AC009313.2-201ENST00000417893 1941 ntBASIC4.38□□□□□ -1.71
MSH3P20585 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
MSH3P20585 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
MSH3P20585 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
MSH3P20585 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.38□□□□□ -1.71
MSH3P20585 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
MSH3P20585 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
MSH3P20585 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
MSH3P20585 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
MSH3P20585 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
MSH3P20585 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
MSH3P20585 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
MSH3P20585 RNA5SP447-201ENST00000363749 119 ntBASIC4.38□□□□□ -1.71
MSH3P20585 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
MSH3P20585 LAP3P1-201ENST00000403648 294 ntBASIC4.38□□□□□ -1.71
MSH3P20585 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.38□□□□□ -1.71
MSH3P20585 AC105402.1-201ENST00000413336 545 ntBASIC4.38□□□□□ -1.71
MSH3P20585 TCEA1P4-201ENST00000415066 844 ntBASIC4.38□□□□□ -1.71
MSH3P20585 NANOGP5-201ENST00000424456 877 ntBASIC4.38□□□□□ -1.71
MSH3P20585 OSTCP5-201ENST00000425293 453 ntBASIC4.38□□□□□ -1.71
MSH3P20585 IPMKP1-201ENST00000425988 855 ntBASIC4.38□□□□□ -1.71
MSH3P20585 MTCYBP15-201ENST00000433123 1127 ntBASIC4.38□□□□□ -1.71
MSH3P20585 FTH1P16-201ENST00000435241 552 ntBASIC4.38□□□□□ -1.71
MSH3P20585 ELOCP11-201ENST00000436690 332 ntBASIC4.38□□□□□ -1.71
MSH3P20585 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC4.38□□□□□ -1.71
MSH3P20585 UBE2V1P3-201ENST00000439651 417 ntBASIC4.38□□□□□ -1.71
MSH3P20585 ELOCP16-201ENST00000444494 332 ntBASIC4.38□□□□□ -1.71
MSH3P20585 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
MSH3P20585 RPS27AP15-201ENST00000447672 466 ntBASIC4.38□□□□□ -1.71
MSH3P20585 RPS4XP6-201ENST00000477670 797 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 162 ms