Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.89□□□□□ -1.79
SDC1P18827 RNA5SP366-201ENST00000365454 123 ntBASIC3.89□□□□□ -1.79
SDC1P18827 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
SDC1P18827 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC3.89□□□□□ -1.79
SDC1P18827 RNU6-317P-201ENST00000384031 107 ntBASIC3.89□□□□□ -1.79
SDC1P18827 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
SDC1P18827 U3.22-201ENST00000391120 215 ntBASIC3.89□□□□□ -1.79
SDC1P18827 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC3.89□□□□□ -1.79
SDC1P18827 AL603766.1-201ENST00000407763 664 ntBASIC3.89□□□□□ -1.79
SDC1P18827 VTA1P1-201ENST00000414044 866 ntBASIC3.89□□□□□ -1.79
SDC1P18827 TCEA1P4-201ENST00000415066 844 ntBASIC3.89□□□□□ -1.79
SDC1P18827 UBE2D3P3-201ENST00000426992 425 ntBASIC3.89□□□□□ -1.79
SDC1P18827 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
SDC1P18827 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.89□□□□□ -1.79
SDC1P18827 RPL7P29-201ENST00000437151 728 ntBASIC3.89□□□□□ -1.79
SDC1P18827 VN1R25P-201ENST00000443385 738 ntBASIC3.89□□□□□ -1.79
SDC1P18827 ZNF736P6Y-201ENST00000447526 1213 ntBASIC3.89□□□□□ -1.79
SDC1P18827 VN1R40P-201ENST00000455196 941 ntBASIC3.89□□□□□ -1.79
SDC1P18827 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.89□□□□□ -1.79
SDC1P18827 RN7SL303P-201ENST00000469773 251 ntBASIC3.89□□□□□ -1.79
SDC1P18827 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.89□□□□□ -1.79
SDC1P18827 RN7SL481P-201ENST00000477764 299 ntBASIC3.89□□□□□ -1.79
SDC1P18827 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC3.89□□□□□ -1.79
SDC1P18827 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC3.89□□□□□ -1.79
SDC1P18827 AC108475.1-201ENST00000507880 950 ntBASIC3.89□□□□□ -1.79
SDC1P18827 MTND1P36-201ENST00000522384 936 ntBASIC3.89□□□□□ -1.79
SDC1P18827 OR5AK3P-201ENST00000527486 1297 ntBASIC3.89□□□□□ -1.79
SDC1P18827 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC3.89□□□□□ -1.79
SDC1P18827 AC025260.1-201ENST00000548858 430 ntBASIC3.89□□□□□ -1.79
SDC1P18827 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.89□□□□□ -1.79
SDC1P18827 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC3.89□□□□□ -1.79
SDC1P18827 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC3.89□□□□□ -1.79
SDC1P18827 MIR5096-201ENST00000583713 70 ntBASIC3.89□□□□□ -1.79
SDC1P18827 MIR5684-201ENST00000585074 65 ntBASIC3.89□□□□□ -1.79
SDC1P18827 AC008536.1-201ENST00000602872 669 ntBASIC3.89□□□□□ -1.79
SDC1P18827 AL451044.1-201ENST00000604867 238 ntBASIC3.89□□□□□ -1.79
SDC1P18827 AP000255.1-201ENST00000610276 676 ntBASIC3.89□□□□□ -1.79
SDC1P18827 AC243654.2-201ENST00000612843 443 ntBASIC3.89□□□□□ -1.79
SDC1P18827 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC3.89□□□□□ -1.79
SDC1P18827 AL121890.3-201ENST00000618494 516 ntBASIC3.89□□□□□ -1.79
SDC1P18827 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC3.89□□□□□ -1.79
SDC1P18827 AC116563.2-201ENST00000624751 535 ntBASIC3.89□□□□□ -1.79
SDC1P18827 AP000720.1-201ENST00000625091 483 ntBASIC3.89□□□□□ -1.79
SDC1P18827 AC083865.1-201ENST00000636634 831 ntBASIC3.89□□□□□ -1.79
SDC1P18827 METTL8-219ENST00000640734 726 ntTSL 2 BASIC3.89□□□□□ -1.79
SDC1P18827 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.89□□□□□ -1.79
SDC1P18827 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.89□□□□□ -1.79
SDC1P18827 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SDC1P18827 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
SDC1P18827 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
SDC1P18827 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
SDC1P18827 AC018555.1-201ENST00000567548 1980 ntBASIC3.89□□□□□ -1.79
SDC1P18827 AC010300.1-201ENST00000600671 5134 ntBASIC3.89□□□□□ -1.79
SDC1P18827 AC017007.4-201ENST00000503353 1352 ntBASIC3.89□□□□□ -1.79
SDC1P18827 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SDC1P18827 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
SDC1P18827 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SDC1P18827 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.88□□□□□ -1.79
SDC1P18827 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
SDC1P18827 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.88□□□□□ -1.79
SDC1P18827 RNA5SP502-201ENST00000362694 119 ntBASIC3.88□□□□□ -1.79
SDC1P18827 SNORD35B-201ENST00000363660 87 ntBASIC3.88□□□□□ -1.79
SDC1P18827 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
SDC1P18827 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SDC1P18827 RAC1P3-201ENST00000416129 580 ntBASIC3.88□□□□□ -1.79
SDC1P18827 AL606495.1-201ENST00000422100 813 ntBASIC3.88□□□□□ -1.79
SDC1P18827 AL158073.1-201ENST00000426848 1104 ntBASIC3.88□□□□□ -1.79
SDC1P18827 NPM1P24-201ENST00000428039 894 ntBASIC3.88□□□□□ -1.79
SDC1P18827 YWHAEP5-201ENST00000431545 765 ntBASIC3.88□□□□□ -1.79
SDC1P18827 ARL5AP2-201ENST00000444698 533 ntBASIC3.88□□□□□ -1.79
SDC1P18827 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC3.88□□□□□ -1.79
SDC1P18827 APOOP2-201ENST00000461561 539 ntBASIC3.88□□□□□ -1.79
SDC1P18827 AL049829.1-201ENST00000465411 156 ntBASIC3.88□□□□□ -1.79
SDC1P18827 AC104687.1-201ENST00000485829 412 ntBASIC3.88□□□□□ -1.79
SDC1P18827 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.88□□□□□ -1.79
SDC1P18827 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
SDC1P18827 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.88□□□□□ -1.79
SDC1P18827 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.88□□□□□ -1.79
SDC1P18827 GNRHR2P1-201ENST00000555315 631 ntBASIC3.88□□□□□ -1.79
SDC1P18827 HMGB3P26-201ENST00000560051 582 ntBASIC3.88□□□□□ -1.79
SDC1P18827 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC3.88□□□□□ -1.79
SDC1P18827 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC3.88□□□□□ -1.79
SDC1P18827 AC022968.1-201ENST00000567372 442 ntBASIC3.88□□□□□ -1.79
SDC1P18827 AC106734.1-201ENST00000568646 663 ntBASIC3.88□□□□□ -1.79
SDC1P18827 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC3.88□□□□□ -1.79
SDC1P18827 AC015911.5-201ENST00000587076 451 ntBASIC3.88□□□□□ -1.79
SDC1P18827 AC012254.4-201ENST00000588843 273 ntBASIC3.88□□□□□ -1.79
SDC1P18827 AC068790.4-201ENST00000602474 263 ntBASIC3.88□□□□□ -1.79
SDC1P18827 AC068790.5-201ENST00000602741 355 ntBASIC3.88□□□□□ -1.79
SDC1P18827 AC090948.2-201ENST00000607363 564 ntBASIC3.88□□□□□ -1.79
SDC1P18827 AC116651.1-201ENST00000609724 556 ntBASIC3.88□□□□□ -1.79
SDC1P18827 RN7SL722P-201ENST00000617780 284 ntBASIC3.88□□□□□ -1.79
SDC1P18827 RN7SL565P-201ENST00000618246 284 ntBASIC3.88□□□□□ -1.79
SDC1P18827 MIR4727-201ENST00000622232 55 ntBASIC3.88□□□□□ -1.79
SDC1P18827 AP000843.1-201ENST00000624880 701 ntBASIC3.88□□□□□ -1.79
SDC1P18827 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.88□□□□□ -1.79
SDC1P18827 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC3.88□□□□□ -1.79
SDC1P18827 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.88□□□□□ -1.79
SDC1P18827 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
SDC1P18827 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms