Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC003985.2-201ENST00000562268 1669 ntBASIC3.69□□□□□ -1.82
COL6A3P12111 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC3.69□□□□□ -1.82
COL6A3P12111 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC3.68□□□□□ -1.82
COL6A3P12111 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC3.68□□□□□ -1.82
COL6A3P12111 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.68□□□□□ -1.82
COL6A3P12111 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL6A3P12111 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL6A3P12111 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
COL6A3P12111 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
COL6A3P12111 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC3.68□□□□□ -1.82
COL6A3P12111 U3.44-201ENST00000458938 192 ntBASIC3.68□□□□□ -1.82
COL6A3P12111 AC025181.1-201ENST00000477507 416 ntBASIC3.68□□□□□ -1.82
COL6A3P12111 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC3.68□□□□□ -1.82
COL6A3P12111 AC025754.2-201ENST00000606491 432 ntBASIC3.68□□□□□ -1.82
COL6A3P12111 AL590808.1-201ENST00000618696 141 ntBASIC3.68□□□□□ -1.82
COL6A3P12111 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL6A3P12111 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL6A3P12111 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL6A3P12111 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
COL6A3P12111 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC3.68□□□□□ -1.82
COL6A3P12111 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL6A3P12111 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL6A3P12111 AL022323.4-201ENST00000623980 13120 ntBASIC3.68□□□□□ -1.82
COL6A3P12111 Y_RNA.118-201ENST00000363300 101 ntBASIC3.68□□□□□ -1.82
COL6A3P12111 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC3.68□□□□□ -1.82
COL6A3P12111 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.68□□□□□ -1.82
COL6A3P12111 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.68□□□□□ -1.82
COL6A3P12111 RPL23AP25-201ENST00000430973 463 ntBASIC3.68□□□□□ -1.82
COL6A3P12111 CBX1P4-201ENST00000439415 457 ntBASIC3.68□□□□□ -1.82
COL6A3P12111 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.68□□□□□ -1.82
COL6A3P12111 OR5M7P-201ENST00000526140 972 ntBASIC3.68□□□□□ -1.82
COL6A3P12111 LSM1P2-201ENST00000604911 322 ntBASIC3.68□□□□□ -1.82
COL6A3P12111 AC008966.2-201ENST00000606157 453 ntBASIC3.68□□□□□ -1.82
COL6A3P12111 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL6A3P12111 NCOA4P2-201ENST00000340589 1813 ntBASIC3.68□□□□□ -1.82
COL6A3P12111 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL6A3P12111 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL6A3P12111 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.68□□□□□ -1.82
COL6A3P12111 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.68□□□□□ -1.82
COL6A3P12111 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
COL6A3P12111 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC3.68□□□□□ -1.82
COL6A3P12111 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL6A3P12111 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC3.67□□□□□ -1.82
COL6A3P12111 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC3.67□□□□□ -1.82
COL6A3P12111 DEFB122-202ENST00000569013 197 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL6A3P12111 AL645937.1-201ENST00000641739 1652 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL6A3P12111 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
COL6A3P12111 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
COL6A3P12111 AL021877.2-201ENST00000624442 10684 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL6A3P12111 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL6A3P12111 MYL8P-204ENST00000431574 518 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC3.67□□□□□ -1.82
COL6A3P12111 AC006517.1-201ENST00000480485 328 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.67□□□□□ -1.82
COL6A3P12111 AC108941.1-201ENST00000502853 530 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 PHBP17-201ENST00000528576 541 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 AP000873.5-201ENST00000533906 236 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.67□□□□□ -1.82
COL6A3P12111 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.67□□□□□ -1.82
COL6A3P12111 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.67□□□□□ -1.82
COL6A3P12111 AC098826.3-201ENST00000603823 466 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 AC064859.1-201ENST00000624741 174 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
COL6A3P12111 AC010401.2-201ENST00000575137 4934 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC3.67□□□□□ -1.82
COL6A3P12111 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
COL6A3P12111 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC3.67□□□□□ -1.82
COL6A3P12111 TPTE2P3-201ENST00000441562 1189 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 AL135938.1-201ENST00000443141 297 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 RPS4XP13-201ENST00000483219 789 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC3.67□□□□□ -1.82
COL6A3P12111 AC023389.2-201ENST00000580031 955 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.67□□□□□ -1.82
COL6A3P12111 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL6A3P12111 AC015813.6-201ENST00000624409 5808 ntBASIC3.67□□□□□ -1.82
COL6A3P12111 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 NOL8P1-201ENST00000508336 3529 ntBASIC3.66□□□□□ -1.82
COL6A3P12111 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
COL6A3P12111 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC3.66□□□□□ -1.82
COL6A3P12111 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 HMGN1P24-201ENST00000412282 298 ntBASIC3.66□□□□□ -1.82
COL6A3P12111 PGBD4P8-201ENST00000412993 562 ntBASIC3.66□□□□□ -1.82
COL6A3P12111 EEF1A1P41-201ENST00000414667 207 ntBASIC3.66□□□□□ -1.82
COL6A3P12111 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.66□□□□□ -1.82
COL6A3P12111 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC3.66□□□□□ -1.82
COL6A3P12111 AC140076.1-201ENST00000449897 361 ntBASIC3.66□□□□□ -1.82
COL6A3P12111 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.66□□□□□ -1.82
COL6A3P12111 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC3.66□□□□□ -1.82
COL6A3P12111 RN7SL371P-201ENST00000578099 267 ntBASIC3.66□□□□□ -1.82
COL6A3P12111 AC079089.3-201ENST00000603094 673 ntBASIC3.66□□□□□ -1.82
COL6A3P12111 IMMP1LP1-201ENST00000605170 488 ntBASIC3.66□□□□□ -1.82
COL6A3P12111 AC103710.3-201ENST00000608157 948 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms