Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 IGLVIV-65-201ENST00000517313 360 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 HMGB1P23-201ENST00000518743 568 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 AC010476.1-201ENST00000519111 851 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD4P09016 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD4P09016 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.03□□□□□ -1.76
HOXD4P09016 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD4P09016 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXD4P09016 AC107016.1-201ENST00000550463 337 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 PSMB7P1-201ENST00000556349 514 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 AC068714.1-201ENST00000559623 800 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD4P09016 AL158211.1-201ENST00000566763 763 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 AC090312.1-201ENST00000580637 348 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXD4P09016 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXD4P09016 IPO5P1-202ENST00000600039 287 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 BPIFA4P-203ENST00000603168 689 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 AC005034.4-201ENST00000603612 899 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 AC079880.2-201ENST00000603790 1213 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 ARF4P1-201ENST00000605447 541 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXD4P09016 AP001033.2-201ENST00000609701 1003 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 AP005229.2-201ENST00000609980 697 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 ZYXP1-201ENST00000617638 118 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 AL445567.2-201ENST00000618935 498 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 AC015908.5-201ENST00000623289 343 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 AL359715.5-201ENST00000623431 443 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 AP003476.1-201ENST00000623984 516 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 AP000843.1-201ENST00000624880 701 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HOXD4P09016 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXD4P09016 CPHL1P-201ENST00000461341 3407 ntBASIC4.03□□□□□ -1.76
HOXD4P09016 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXD4P09016 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HOXD4P09016 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXD4P09016 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
HOXD4P09016 AC008725.1-201ENST00000605123 2263 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD4P09016 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
HOXD4P09016 AL645568.2-201ENST00000432815 1337 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD4P09016 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXD4P09016 RNU6-532P-201ENST00000384318 107 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 SNORA37-201ENST00000384504 129 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 MIR3065-201ENST00000390137 79 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 FCF1P5-201ENST00000406490 482 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 SNORA11F-201ENST00000408237 128 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.02□□□□□ -1.77
HOXD4P09016 RNA5SP498-201ENST00000411342 120 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.02□□□□□ -1.77
HOXD4P09016 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD4P09016 RAD23BP1-201ENST00000421404 1227 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD4P09016 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 AP001324.1-201ENST00000428553 399 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD4P09016 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXD4P09016 AL353597.2-202ENST00000434901 373 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 RPL7P28-201ENST00000437739 740 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXD4P09016 AC023512.1-201ENST00000444513 499 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 RPL7P55-201ENST00000450522 746 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 VN1R32P-201ENST00000452234 905 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD4P09016 RPS26P15-201ENST00000488067 348 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 RPL21P129-201ENST00000491732 478 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 RN7SL812P-201ENST00000493791 279 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD4P09016 AC010460.2-201ENST00000509054 677 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXD4P09016 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD4P09016 AC108471.1-201ENST00000513977 287 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD4P09016 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD4P09016 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD4P09016 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.02□□□□□ -1.77
HOXD4P09016 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD4P09016 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD4P09016 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD4P09016 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXD4P09016 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC4.02□□□□□ -1.77
HOXD4P09016 MTND1P8-201ENST00000571424 950 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXD4P09016 CBX3P2-202ENST00000583365 535 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.02□□□□□ -1.77
HOXD4P09016 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXD4P09016 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD4P09016 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD4P09016 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD4P09016 AC023762.1-201ENST00000603280 584 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 AC123786.2-201ENST00000603459 275 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 COX6CP4-201ENST00000605798 228 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXD4P09016 AL392048.1-201ENST00000613946 534 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 uc_338.13-201ENST00000618243 179 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 AC090506.2-201ENST00000624521 419 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 AC099654.9-201ENST00000637055 678 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 AC009452.1-201ENST00000640823 606 ntBASIC4.02□□□□□ -1.77
HOXD4P09016 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms