Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA3O43365 NANOGP6-201ENST00000429190 847 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 AL121776.1-201ENST00000429337 372 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 YWHAZP8-201ENST00000436935 731 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 ARPC3P5-201ENST00000448802 534 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 RPL23AP60-201ENST00000450011 454 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 AC022431.1-201ENST00000450941 438 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 FABP3P2-201ENST00000453169 399 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 RPS27AP3-201ENST00000453803 454 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 MTCO3P2-201ENST00000457365 171 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 RPL38P1-201ENST00000460914 211 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXA3O43365 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA3O43365 SNRPCP3-201ENST00000474888 476 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 RN7SL177P-201ENST00000476596 299 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 AC104986.1-201ENST00000517978 436 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXA3O43365 OR5M2P-201ENST00000529003 936 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 AP003122.4-201ENST00000530980 758 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXA3O43365 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXA3O43365 HMGN2P47-201ENST00000559378 272 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXA3O43365 AL157394.1-201ENST00000562983 1224 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 FGF7P1-201ENST00000582820 288 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 HMGN1P30-201ENST00000589286 268 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 AC008277.2-201ENST00000605196 797 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 RPL12P48-201ENST00000605620 304 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 HSPE1P14-201ENST00000605812 302 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 AC008945.2-201ENST00000606056 604 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 AC008536.2-201ENST00000607284 349 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 AC022467.1-201ENST00000614738 749 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 TCL6_3.1-201ENST00000619064 137 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 AP003400.5-201ENST00000624827 617 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA3O43365 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC4.78□□□□□ -1.64
HOXA3O43365 AL022578.1-201ENST00000439330 1433 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA3O43365 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXA3O43365 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA3O43365 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA3O43365 POT1-202ENST00000393329 3950 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA3O43365 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA3O43365 MTND4P12-201ENST00000498999 1377 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 CASC19-280ENST00000642102 1351 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.65
HOXA3O43365 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.65
HOXA3O43365 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.65
HOXA3O43365 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA3O43365 AL731532.1-201ENST00000623972 4236 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA3O43365 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA3O43365 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA3O43365 OR13C1P-202ENST00000641378 2919 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA3O43365 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA3O43365 AL137141.1-201ENST00000624622 4836 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
HOXA3O43365 NLN-202ENST00000502464 8354 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXA3O43365 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA3O43365 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA3O43365 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
HOXA3O43365 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
HOXA3O43365 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA3O43365 Y_RNA.11-201ENST00000362375 109 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 SNORD8-201ENST00000363915 110 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
HOXA3O43365 RN7SKP293-201ENST00000411389 296 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXA3O43365 TPMTP2-201ENST00000414372 726 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXA3O43365 AC016831.2-201ENST00000417179 352 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXA3O43365 PIGFP2-201ENST00000421400 651 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXA3O43365 FCF1P1-201ENST00000432690 571 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 ARPC3P1-201ENST00000437218 533 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 SUMO2P3-201ENST00000438311 288 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 RPL22P17-201ENST00000438729 315 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXA3O43365 RPL23AP16-201ENST00000441715 421 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 RPS7P3-201ENST00000443360 580 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 AP000281.1-201ENST00000444036 316 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 AC114755.5-201ENST00000447760 831 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXA3O43365 AC112187.1-201ENST00000455837 479 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 AC104164.1-201ENST00000460282 590 ntBASIC4.77□□□□□ -1.65
HOXA3O43365 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms